Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.1e-125 454.9 712 100.0
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 2.4e-115 420.6 712 97.9
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 9.4e-88 328.9 662 97.6
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 7.5e-61 239.6 712 77.7
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 1.9e-56 224.9 669 71.2
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 4.2e-48 197.2 700 64.6
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 7.5e-45 186.4 560 86.1
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.3e-44 185.7 560 88.4
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 1.3e-44 185.7 179 53.6
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 1.6e-42 178.7 197 48.2
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 2.3e-41 174.9 174 52.9
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 2.1e-39 168.3 213 45.1
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 1.4e-38 165.6 179 48.0
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 3.1e-38 164.5 121 64.5
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 6.8e-38 163.3 110 84.5
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 1.5e-37 162.2 110 84.5
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 4.4e-37 160.6 182 47.8
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 4.4e-37 160.6 110 72.7
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 9.8e-37 159.5 110 82.7
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.7e-36 158.7 178 47.2
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.7e-36 158.7 110 83.6
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.9e-36 157.9 107 86.9
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.7e-36 157.5 110 82.7
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 4.9e-36 157.1 178 47.2
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 4.9e-36 157.1 108 87.0
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 6.4e-36 156.8 115 65.2
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 6.4e-36 156.8 186 45.2
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.1e-35 156.0 110 81.8
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 1.4e-35 155.6 684 65.8
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.9e-35 155.2 659 66.9
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.9e-35 155.2 190 45.3
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 2.4e-35 154.8 109 82.6
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 7.0e-35 153.3 109 81.7
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 7.0e-35 153.3 109 81.7
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 1.2e-34 152.5 109 80.7
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.2e-34 152.5 103 90.3
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 1.2e-34 152.5 110 80.9
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 1.6e-34 152.1 109 80.7
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 1.6e-34 152.1 109 79.8
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 1.6e-34 152.1 109 79.8
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 1.6e-34 152.1 109 79.8
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.6e-34 152.1 108 82.4
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 1.6e-34 152.1 110 78.2
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 1.6e-34 152.1 121 57.9
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 1.6e-34 152.1 109 80.7
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.0e-34 151.8 110 80.0
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.0e-34 151.8 110 80.0
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 2.7e-34 151.4 169 45.0
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 4.6e-34 150.6 179 44.7
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 6.0e-34 150.2 221 38.0
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 6.0e-34 150.2 177 44.6
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 1.0e-33 149.4 108 80.6
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.3e-33 149.1 121 57.9
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.3e-33 149.1 106 84.0
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 2.3e-33 148.3 98 90.8
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 6.6e-33 146.7 108 82.4
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 6.6e-33 146.7 183 43.7
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 8.6e-33 146.4 179 43.6
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 1.5e-32 145.6 121 54.5
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 1.9e-32 145.2 118 57.6
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 3.3e-32 144.4 180 42.8
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.3e-32 143.3 122 59.8
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 9.5e-32 142.9 108 75.0
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 9.5e-32 142.9 121 52.1
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 2.1e-31 141.7 121 53.7
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 2.1e-31 141.7 214 39.7
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 4.7e-31 140.6 121 57.0
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 1.1e-30 139.4 102 81.4
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 2.3e-30 138.3 121 52.9
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 2.3e-30 138.3 122 52.5
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 5.2e-30 137.1 181 43.6
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 6.8e-30 136.7 118 55.9
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.2e-29 136.0 110 63.6
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 2.6e-29 134.8 227 37.0
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 9.8e-29 132.9 180 43.3
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 1.3e-28 132.5 97 80.4
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 3.7e-28 131.0 95 82.1
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 4.9e-28 130.6 227 36.6
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 6.4e-28 130.2 122 51.6
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 1.1e-27 129.4 122 49.2
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 4.1e-27 127.5 121 50.4
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 9.2e-27 126.3 86 90.7
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.7e-26 124.8 104 62.5
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 2.7e-26 124.8 92 81.5
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 3.5e-26 124.4 168 44.0
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 6.0e-26 123.6 175 37.7
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 5.1e-25 120.6 86 87.2
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 1.1e-24 119.4 122 50.0
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 3.3e-24 117.9 86 86.0
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 3.3e-24 117.9 86 86.0
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 2.8e-23 114.8 86 83.7
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.4e-22 112.5 134 41.0
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 1.4e-22 112.5 85 80.0
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 2.2e-20 105.1 84 61.9
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 4.9e-20 104.0 80 82.5
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 8.3e-20 103.2 105 47.6
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.1e-19 102.8 123 45.5
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 1.9e-19 102.1 88 62.5
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 2.4e-19 101.7 105 47.6
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 1.6e-18 99.0 83 57.8
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.0e-17 96.3 72 69.4
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 3.3e-16 91.3 120 41.7
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 1.1e-14 86.3 84 70.2
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 2.4e-14 85.1 102 39.2
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 1.9e-11 75.5 83 44.6
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 3.2e-11 74.7 87 65.5
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 5.4e-11 73.9 59 86.4
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 3.5e-10 71.2 60 56.7
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.8e-10 70.1 39 74.4


User provided reference genes

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