Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.6e-297 1024.6 527 100.0
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 4.0e-293 1010.7 527 98.7
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 2.1e-278 961.8 524 94.3
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 6.2e-238 827.4 526 82.9
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 8.7e-224 780.4 527 78.6
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.5e-223 779.6 528 78.0
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.2e-209 733.4 526 72.4
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 2.6e-167 592.8 525 59.2
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.4e-165 587.0 540 58.0
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.1e-165 585.9 533 58.5
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 5.5e-162 575.1 527 57.5
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 1.0e-160 570.9 533 58.9
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 4.0e-160 568.9 559 55.6
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.4e-159 565.5 558 55.2
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.4e-159 565.5 558 55.2
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 4.1e-157 558.9 515 57.5
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.2e-156 557.4 525 55.2
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.7e-156 556.2 561 54.7
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 4.5e-156 555.4 531 54.6
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 2.0e-151 540.0 540 55.4
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 9.8e-151 537.7 534 54.3
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.9e-150 536.2 525 54.7
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.7e-150 535.8 562 54.4
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.4e-149 533.1 522 54.4
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.4e-149 533.1 522 54.4
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 9.2e-149 531.2 526 54.9
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.6e-148 530.4 544 50.7
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.6e-148 530.4 534 54.1
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 6.0e-148 528.5 540 53.3
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.3e-147 526.6 522 54.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 8.6e-147 524.6 547 51.9
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.5e-146 523.9 526 53.4
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 2.5e-146 523.1 538 52.4
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 3.6e-145 519.2 522 53.6
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.4e-144 517.3 542 53.9
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 5.2e-144 515.4 556 52.5
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 6.8e-144 515.0 568 50.4
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.0e-143 513.5 530 51.3
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.0e-143 513.5 526 51.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 4.4e-143 512.3 523 51.8
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.2e-142 510.0 536 51.5
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 8.3e-142 508.1 544 51.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.4e-141 506.5 529 51.0
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 5.4e-141 505.4 528 51.5
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 7.1e-141 505.0 531 51.4
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.6e-140 503.8 528 51.3
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.5e-140 502.7 526 50.0
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 6.0e-140 501.9 531 52.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.9e-139 499.2 531 50.8
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.9e-138 496.9 539 50.3
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.3e-138 496.1 539 51.0
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 7.3e-138 495.0 524 51.5
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.1e-136 491.1 520 52.9
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.2e-135 487.6 551 49.7
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.7e-134 482.6 544 46.7
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.9e-134 482.3 529 50.7
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 4.9e-134 482.3 525 49.9
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 6.4e-134 481.9 549 49.2
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.1e-133 481.1 525 49.9
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.1e-133 481.1 538 49.3
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.9e-131 472.6 544 48.7
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 5.6e-130 468.8 518 49.8
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 7.3e-130 468.4 526 47.1
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.6e-129 467.2 526 47.1
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.8e-129 466.5 545 47.9
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.6e-129 466.1 525 47.8
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 8.1e-129 464.9 526 48.1
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.1e-128 464.5 524 49.0
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.0e-127 460.3 482 53.1
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.6e-127 459.9 526 48.1
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 3.4e-127 459.5 527 48.0
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 5.8e-127 458.8 521 50.1
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 7.6e-127 458.4 528 45.6
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 9.9e-127 458.0 526 45.8
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 4.9e-126 455.7 533 46.9
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.4e-126 455.3 519 50.3
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 8.4e-126 454.9 526 46.8
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.9e-125 453.8 508 47.4
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.4e-125 453.4 525 47.0
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.2e-124 451.1 492 50.6
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.7e-124 449.9 525 46.5
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 3.3e-122 443.0 526 46.0
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 5.6e-122 442.2 517 46.6
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.3e-121 441.0 528 45.3
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.6e-121 440.7 525 45.9
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.6e-121 440.7 513 46.8
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.8e-121 439.9 515 46.2
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-120 438.0 516 46.1
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.1e-120 438.0 544 46.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.8e-120 437.2 551 43.4
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 9.0e-120 434.9 518 45.8
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 2.0e-119 433.7 514 45.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 2.6e-119 433.3 530 43.6
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 5.8e-119 432.2 514 45.9
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 9.9e-119 431.4 515 44.7
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 3.8e-118 429.5 518 45.9
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.4e-117 427.6 526 44.3
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 4.8e-113 412.5 523 46.7
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 6.2e-113 412.1 528 45.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.2e-111 407.9 512 43.4
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 4.5e-111 406.0 528 43.2
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 2.7e-108 396.7 529 41.6
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.0e-107 394.8 533 43.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.1e-107 392.5 522 45.0
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 5.1e-107 392.5 537 42.6
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 6.2e-105 385.6 518 40.5
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.0e-104 381.7 510 43.1
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.2e-103 381.3 543 41.8
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.1e-101 374.8 564 40.2
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 3.9e-99 366.3 523 41.5
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.5e-98 364.4 538 39.8
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.9e-98 364.0 535 39.4
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 4.3e-98 362.8 385 50.4
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 4.3e-98 362.8 513 37.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.1e-91 339.3 512 40.6
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 8.7e-91 338.6 569 38.8
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 9.0e-88 328.6 537 38.9
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 4.2e-85 319.7 520 38.7
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 2.3e-83 313.9 485 40.2
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-77 293.9 521 36.7
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-76 290.8 521 36.7
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.1e-72 276.6 527 36.1
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.5e-71 273.1 477 37.5
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.9e-71 272.7 477 37.7
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 8.0e-68 262.3 509 34.2
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 5.4e-56 223.0 527 29.2
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 2.1e-52 211.1 268 45.1
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-51 206.8 473 33.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-51 206.8 473 33.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-47 194.1 410 32.9
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 2.8e-44 184.1 317 38.2
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.9e-41 173.3 172 50.6
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 2.0e-39 167.9 526 27.8
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.9e-39 166.4 143 57.3
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 8.9e-35 152.5 477 27.0
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.0e-34 151.4 497 27.4
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.4e-34 150.2 498 26.7
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.9e-32 144.8 148 48.0
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 7.8e-31 139.4 408 28.2
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.5e-29 135.2 454 25.3
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 2.5e-29 134.4 456 25.2
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 7.1e-24 116.3 494 24.5
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-21 107.8 297 32.7
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 8.4e-17 92.8 391 27.1
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.7e-15 87.8 66 59.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 6.0e-15 86.7 55 70.9
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 7.3e-13 79.7 81 48.1
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.1e-11 74.3 212 26.9
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 4.0e-11 73.9 56 58.9
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.6e-10 71.2 114 34.2
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 7.6e-10 69.7 54 48.1
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.9e-09 67.0 56 55.4
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.1e-08 65.9 108 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 2.4e-08 64.7 124 27.4
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 4.6e-07 60.5 45 51.1


User provided reference genes

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