Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 7.1e-187 657.1 335 100.0
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 6.8e-182 640.6 335 97.9
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.8e-159 565.5 310 91.3
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.0e-145 520.4 334 77.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.2e-127 459.5 330 71.5
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.8e-121 437.6 332 67.2
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.2e-117 427.2 266 79.3
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 5.5e-115 418.3 333 65.5
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 8.0e-114 414.5 333 64.0
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.0e-113 414.1 333 64.9
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 1.0e-108 397.5 329 62.0
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.1e-107 394.0 322 63.7
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 3.0e-105 386.0 331 59.2
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 5.2e-105 385.2 329 58.1
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 6.8e-105 384.8 309 60.2
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 2.8e-103 379.4 321 62.3
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 4.8e-103 378.6 231 80.1
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.6e-98 363.6 335 58.8
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.6e-98 362.5 305 60.0
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 5.2e-97 358.6 332 57.8
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.6e-96 356.3 332 57.8
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 2.6e-96 356.3 332 56.9
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 3.4e-96 355.9 305 60.0
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.3e-95 354.0 332 56.9
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 3.7e-95 352.4 333 57.1
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.8e-94 350.1 323 56.0
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 7.0e-94 348.2 336 54.8
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.2e-93 347.4 333 56.2
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.6e-93 347.1 335 54.6
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 1.6e-93 347.1 337 54.6
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.5e-93 345.9 321 56.1
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.5e-93 345.9 332 54.8
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.3e-92 343.2 326 55.5
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 3.8e-92 342.4 338 53.8
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 3.8e-92 342.4 320 55.3
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 5.0e-92 342.0 326 54.9
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 6.6e-92 341.7 307 56.7
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 6.6e-92 341.7 326 55.2
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 8.6e-92 341.3 325 56.0
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.1e-91 340.9 337 54.0
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.5e-91 340.5 336 53.6
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.9e-91 340.1 352 51.4
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.9e-91 340.1 326 54.6
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.5e-91 339.7 333 54.1
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 4.3e-91 339.0 337 53.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 5.6e-91 338.6 337 53.4
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 7.3e-91 338.2 336 53.6
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 9.5e-91 337.8 323 54.5
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 2.1e-90 336.7 327 56.0
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 3.6e-90 335.9 331 54.7
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 3.6e-90 335.9 325 54.5
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 3.6e-90 335.9 334 53.3
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 4.7e-90 335.5 327 55.0
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 6.1e-90 335.1 324 55.2
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 1.0e-89 334.3 325 54.8
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.0e-89 334.3 308 56.8
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.8e-89 333.6 341 52.8
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 1.8e-89 333.6 305 56.4
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 3.0e-89 332.8 329 52.9
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.0e-89 332.4 303 55.4
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 4.0e-89 332.4 338 52.4
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 5.2e-89 332.0 323 53.6
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 5.2e-89 332.0 339 52.2
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.2e-88 330.9 336 51.8
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.0e-88 330.1 327 53.8
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.6e-88 329.7 338 51.8
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.6e-88 329.7 338 51.8
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.6e-88 329.7 338 51.8
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.4e-88 328.9 322 54.0
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.4e-88 328.9 338 53.6
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 9.8e-88 327.8 334 52.1
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 9.8e-88 327.8 334 52.1
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.3e-87 327.4 319 54.9
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 1.7e-87 327.0 317 52.7
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.2e-87 326.6 334 53.3
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 2.2e-87 326.6 326 53.7
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 2.9e-87 326.2 336 51.8
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 2.9e-87 326.2 336 51.8
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 2.9e-87 326.2 336 51.8
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 2.9e-87 326.2 325 53.2
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 4.9e-87 325.5 322 54.0
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 1.4e-86 323.9 329 52.0
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.8e-86 323.6 338 51.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.8e-86 323.6 324 53.7
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 3.2e-86 322.8 344 51.7
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 5.4e-86 322.0 325 54.2
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 7.0e-86 321.6 318 52.2
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 9.2e-86 321.2 335 52.2
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.0e-85 320.1 339 50.4
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 2.0e-85 320.1 342 52.3
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 2.0e-85 320.1 342 52.3
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 2.0e-85 320.1 337 51.9
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.7e-85 319.7 332 51.8
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 3.5e-85 319.3 306 54.2
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.5e-85 319.3 257 61.1
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.3e-84 317.4 329 51.7
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 1.7e-84 317.0 328 52.4
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.7e-84 317.0 331 48.0
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 3.0e-84 316.2 277 57.8
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 8.6e-84 314.7 324 51.9
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 3.6e-82 309.3 334 50.9
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 4.7e-82 308.9 302 53.6
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-81 307.8 323 52.0
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-81 307.8 323 52.0
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.4e-81 307.4 331 49.8
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.8e-81 307.0 329 50.2
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.8e-81 307.0 329 50.2
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 3.1e-81 306.2 327 49.2
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 3.1e-81 306.2 324 51.2
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 8.9e-81 304.7 327 51.1
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 1.2e-80 304.3 334 51.5
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 1.5e-80 303.9 325 51.7
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 4.4e-80 302.4 322 50.9
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 7.0e-78 295.0 299 52.8
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 4.6e-77 292.4 184 77.7
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 3.0e-76 289.7 332 49.4
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.0e-76 288.9 302 50.3
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 6.6e-76 288.5 332 48.8
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.5e-75 287.3 329 48.6
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.2e-74 284.3 324 50.9
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 3.1e-73 279.6 321 48.9
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 3.1e-73 279.6 323 46.7
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 6.8e-73 278.5 325 47.7
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 5.8e-72 275.4 321 48.0
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 7.5e-72 275.0 265 53.2
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 1.4e-70 270.8 341 47.5
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.1e-70 268.5 180 72.2
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 2.1e-69 266.9 330 44.2
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 2.7e-69 266.5 310 45.8
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.7e-69 266.5 246 55.7
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 3.5e-69 266.2 333 46.5
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 3.5e-69 266.2 163 81.0
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 2.3e-68 263.5 271 51.7
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.3e-68 263.5 304 47.4
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.9e-67 260.4 299 45.5
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.3e-67 259.6 322 45.0
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 2.8e-66 256.5 180 70.6
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 4.7e-66 255.8 302 46.4
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 6.2e-66 255.4 322 44.4
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 8.1e-66 255.0 323 44.6
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.4e-65 253.4 309 42.7
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 6.8e-65 251.9 322 41.9
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.5e-64 250.8 324 43.2
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.5e-64 250.8 324 43.2
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.6e-64 250.0 303 42.2
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.7e-63 247.3 305 43.3
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.4e-62 243.4 274 48.2
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 8.7e-60 235.0 255 50.6
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-58 231.1 180 64.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.6e-58 230.7 387 40.1
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 9.9e-56 221.5 301 41.2
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 4.6e-53 212.6 168 58.9
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.0e-53 212.2 212 51.4
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.0e-52 209.9 180 57.2
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.3e-50 204.5 181 57.5
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.2e-50 202.2 180 55.0
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 6.9e-49 198.7 309 38.2
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.2e-48 198.0 180 54.4
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 8.1e-42 175.3 224 45.1
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.1e-41 174.9 322 33.9
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 3.1e-41 173.3 100 85.0
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-38 164.5 325 33.2
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 9.0e-33 145.2 99 70.7
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 9.3e-30 135.2 159 47.8
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-24 117.9 166 39.8
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 8.5e-23 112.1 307 28.7
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.1e-22 111.7 95 62.1
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-22 111.3 86 60.5
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 2.5e-22 110.5 89 58.4
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 1.6e-21 107.8 166 41.0
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 5.0e-15 86.3 66 63.6
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.9e-14 84.3 76 47.4
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 5.5e-14 82.8 81 46.9
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 7.2e-14 82.4 80 50.0
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.8e-12 77.8 66 65.2
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 8.8e-12 75.5 73 58.9
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 2.8e-10 70.5 49 67.3
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 7.0e-09 65.9 56 58.9
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 7.7e-08 62.4 48 64.6


User provided reference genes

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