Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 7.0e-156 553.9 278 100.0
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 1.4e-132 476.5 288 83.7
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 1.4e-103 380.2 193 95.9
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 2.1e-99 366.3 291 68.4
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 8.4e-93 344.4 297 64.0
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 7.2e-60 235.0 274 45.3
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.6e-59 233.8 279 46.6
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 4.7e-59 232.3 283 45.6
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 2.0e-57 226.9 260 48.5
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 5.7e-57 225.3 233 50.6
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 2.2e-56 223.4 283 43.8
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 3.1e-55 219.5 271 42.8
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 4.1e-55 219.2 275 42.9
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 4.1e-55 219.2 230 46.5
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 9.1e-55 218.0 235 51.9
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 3.5e-54 216.1 248 47.2
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.7e-53 213.8 280 42.1
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.2e-53 213.4 275 42.5
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 1.4e-52 210.7 294 41.8
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 1.9e-52 210.3 282 42.9
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 1.9e-52 210.3 291 40.5
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.6e-51 207.2 278 41.7
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 2.7e-51 206.5 291 39.2
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 3.6e-51 206.1 255 43.5
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 3.6e-51 206.1 261 42.1
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 3.6e-51 206.1 291 41.2
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 6.1e-51 205.3 271 41.0
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 1.8e-50 203.8 289 39.8
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 4.4e-49 199.1 241 43.6
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 1.7e-48 197.2 293 38.9
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.7e-48 197.2 257 44.0
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 1.4e-47 194.1 276 43.1
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.4e-47 194.1 249 42.6
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.4e-47 193.4 278 39.2
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 2.4e-47 193.4 250 42.4
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 2.4e-47 193.4 282 39.7
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.1e-47 193.0 273 44.7
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 7.0e-47 191.8 269 39.4
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 2.6e-46 189.9 271 38.7
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 3.5e-46 189.5 251 41.8
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.3e-45 187.6 287 38.7
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 1.7e-45 187.2 257 40.5
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 2.2e-45 186.8 255 43.9
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 2.9e-45 186.4 288 38.5
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 2.9e-45 186.4 273 39.9
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 1.5e-44 184.1 286 37.8
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.2e-43 181.0 300 36.3
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 2.7e-43 179.9 242 38.4
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.0e-42 177.9 253 39.1
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.8e-42 177.2 249 41.4
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 2.3e-42 176.8 295 39.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.8e-42 175.3 253 39.5
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 2.6e-41 173.3 251 41.4
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 4.4e-41 172.6 266 38.3
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 5.7e-41 172.2 260 40.4
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 1.3e-40 171.0 267 39.3
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.7e-40 170.6 290 36.9
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.4e-39 167.5 195 45.6
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 5.3e-39 165.6 262 38.2
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.2e-38 164.5 289 36.3
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 5.9e-38 162.2 270 38.5
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 1.0e-37 161.4 134 64.2
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 1.3e-37 161.0 270 38.1
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 1.7e-37 160.6 266 36.8
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 3.8e-37 159.5 264 37.5
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.5e-36 157.5 265 37.0
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 3.2e-36 156.4 286 34.3
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 5.5e-36 155.6 266 36.8
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 1.2e-35 154.5 198 41.4
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 2.1e-35 153.7 263 37.3
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 8.0e-35 151.8 261 37.5
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 1.5e-33 147.5 261 36.4
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 1.5e-33 147.5 261 36.4
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.5e-33 147.5 257 35.0
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 5.7e-33 145.6 262 36.3
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 2.8e-32 143.3 258 34.1
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 2.8e-32 143.3 173 43.4
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 8.3e-32 141.7 247 34.0
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 7.7e-30 135.2 243 36.6
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 7.7e-30 135.2 173 42.2
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.3e-29 134.4 248 32.3
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.7e-29 134.0 225 32.4
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 2.5e-28 130.2 203 37.4
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 5.5e-28 129.0 246 33.7
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.2e-25 121.3 234 33.3
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.2e-24 117.1 123 45.5
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 4.1e-23 112.8 148 39.9
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.2e-22 111.3 193 36.8
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 2.9e-21 106.7 170 38.2
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.9e-20 104.0 314 26.1
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 2.8e-19 100.1 115 43.5
Eucgr.G01330 Eucalyptus grandis HOM05D001524 ORTHO05D001392 4.7e-11 72.8 165 28.5
Eucgr.H03199 Eucalyptus grandis HOM05D001524 ORTHO05D001392 4.0e-10 69.7 165 27.9
PSO675G6294 Papaver somniferum HOM05D001524 ORTHO05D001392 1.2e-09 68.2 154 27.9
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 1.5e-09 67.8 88 39.8
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 2.6e-09 67.0 237 24.9
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 3.4e-09 66.6 226 25.2
Lsat_1_v5_gn_9_112561 Lactuca sativa HOM05D001524 ORTHO05D001392 5.8e-09 65.9 189 23.3
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 7.5e-09 65.5 152 28.9
Medtr1g107225 Medicago truncatula HOM05D001524 ORTHO05D001392 9.8e-09 65.1 146 29.5
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 9.8e-09 65.1 203 25.1
FvH4_2g05010 Fragaria vesca HOM05D001524 ORTHO05D001392 1.3e-08 64.7 152 26.3
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 1.3e-08 64.7 132 28.0
Peaxi162Scf00003g02547 Petunia axillaris HOM05D001524 ORTHO05D001392 1.7e-08 64.3 217 27.2
Atru.chr5.2505 Acer truncatum HOM05D001524 ORTHO05D001392 2.9e-08 63.5 209 24.4
Ca_11067_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 3.7e-08 63.2 187 27.3
SEGI_18471 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 3.7e-08 63.2 242 24.4
Nitab4.5_0002647g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 4.9e-08 62.8 238 26.9
Oeu044279.1 Olea europaea HOM05D001524 ORTHO05D001392 4.9e-08 62.8 202 25.2
Prupe.8G136200 Prunus persica HOM05D001524 ORTHO05D001392 4.9e-08 62.8 160 27.5
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 6.4e-08 62.4 235 25.5
Lalb_Chr12g0210281 Lupinus albus HOM05D001524 ORTHO05D001392 6.4e-08 62.4 209 24.9
SEGI_17993 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 6.4e-08 62.4 208 26.0
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 6.4e-08 62.4 226 23.9
Eucgr.H02706 Eucalyptus grandis HOM05D001524 ORTHO05D001392 8.3e-08 62.0 152 26.3
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 8.3e-08 62.0 229 21.8
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 1.1e-07 61.6 152 27.0
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.4e-07 61.2 146 26.7
TWI75G0774 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 1.4e-07 61.2 179 23.5
Cpa.g.sc106.102 Carica papaya HOM05D001524 ORTHO05D001392 1.9e-07 60.8 222 23.0
Cc03_g14200 Coffea canephora HOM05D001524 ORTHO05D001392 1.9e-07 60.8 146 26.0
Hma1.2p1_3964F.1_g338080 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 1.9e-07 60.8 160 27.5
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 1.9e-07 60.8 132 25.8
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 1.9e-07 60.8 209 24.9
Potri.001G299500 Populus trichocarpa HOM05D001524 ORTHO05D001392 1.9e-07 60.8 143 28.7
QL11p033161 Quercus lobata HOM05D001524 ORTHO05D001392 1.9e-07 60.8 187 24.6
Lj9C324T3 Lonicera japonica HOM05D001524 ORTHO05D001392 2.4e-07 60.5 152 27.6
Peaxi162Scf00016g02429 Petunia axillaris HOM05D001524 ORTHO05D001392 2.4e-07 60.5 146 28.1
SEGI_23215 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 2.4e-07 60.5 233 22.7
Atru.chr5.2479 Acer truncatum HOM05D001524 ORTHO05D001392 3.2e-07 60.1 142 28.2
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 3.2e-07 60.1 238 23.9
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 3.2e-07 60.1 223 22.9
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 4.1e-07 59.7 185 25.4
HanXRQChr03g0070441 Helianthus annuus HOM05D001524 ORTHO05D001392 4.1e-07 59.7 165 25.5
Nitab4.5_0001143g0020 Nicotiana tabacum HOM05D001524 ORTHO05D001392 4.1e-07 59.7 146 27.4
PSO675G3303 Papaver somniferum HOM05D001524 ORTHO05D001392 4.1e-07 59.7 159 26.4
Prupe.8G136400 Prunus persica HOM05D001524 ORTHO05D001392 4.1e-07 59.7 152 25.0
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 4.1e-07 59.7 160 27.5
SMO144G0101 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 4.1e-07 59.7 232 25.4
VMungo0720G2936 Vigna mungo HOM05D001524 ORTHO05D001392 4.1e-07 59.7 155 24.5
Hma1.2p1_0796F.1_g219310 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 5.4e-07 59.3 160 26.9
MD05G1090800 Malus domestica HOM05D001524 ORTHO05D001392 5.4e-07 59.3 208 25.5
Sabra16G0188000 Salix brachista HOM05D001524 ORTHO05D001392 5.4e-07 59.3 145 27.6
CsaV3_7G008230 Cucumis sativus L. HOM05D001524 ORTHO05D001392 7.1e-07 58.9 211 26.1
Glyma.20G129900 Glycine max HOM05D001524 ORTHO05D001392 7.1e-07 58.9 192 21.9
Potri.001G299400 Populus trichocarpa HOM05D001524 ORTHO05D001392 7.1e-07 58.9 132 26.5
SMO144G0004 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 7.1e-07 58.9 208 25.5
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 9.2e-07 58.5 179 21.8
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 9.2e-07 58.5 235 21.3
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 9.2e-07 58.5 229 21.4
Glyma.10G261200 Glycine max HOM05D001524 ORTHO05D001392 9.2e-07 58.5 160 21.9
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 9.2e-07 58.5 146 26.7
Nitab4.5_0026736g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 9.2e-07 58.5 146 26.7
Nitab4.5_0001143g0050 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.2e-06 58.2 238 23.1
RcHm_v2.0_Chr6g0254831 Rosa chinensis HOM05D001524 ORTHO05D001392 1.2e-06 58.2 179 25.1
Sabra09G0073000 Salix brachista HOM05D001524 ORTHO05D001392 1.2e-06 58.2 129 28.7
Atru.chr5.2558 Acer truncatum HOM05D001524 ORTHO05D001392 1.6e-06 57.8 199 24.1
CsaV3_7G008240 Cucumis sativus L. HOM05D001524 ORTHO05D001392 1.6e-06 57.8 210 23.8
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 1.6e-06 57.8 132 27.3
PGR042G2205 Punica granatum HOM05D001524 ORTHO05D001392 1.6e-06 57.8 241 23.7
Lj9P324T15 Lonicera japonica HOM05D001524 ORTHO05D001392 2.1e-06 57.4 171 25.7
arahy.Tifrunner.gnm1.ann1.5WL6PR Arachis hypogaea HOM05D001524 ORTHO05D001392 2.7e-06 57.0 208 21.2
Eucgr.G01341 Eucalyptus grandis HOM05D001524 ORTHO05D001392 2.7e-06 57.0 142 26.1
Lj9P323T45 Lonicera japonica HOM05D001524 ORTHO05D001392 2.7e-06 57.0 232 22.0
Actinidia17487 Actinidia chinensis HOM05D001524 ORTHO05D001392 3.5e-06 56.6 192 27.1
CSS0038199 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 3.5e-06 56.6 189 26.5
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 3.5e-06 56.6 243 24.3
TPR.G3271 Trifolium pratense HOM05D001524 ORTHO05D001392 3.5e-06 56.6 152 25.7
TWI79G1228 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 3.5e-06 56.6 172 25.0
Atru.chr3.2811 Acer truncatum HOM05D001524 ORTHO05D001392 4.6e-06 56.2 142 27.5
CSS0007588 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 4.6e-06 56.2 152 25.7
Medtr1g107215 Medicago truncatula HOM05D001524 ORTHO05D001392 4.6e-06 56.2 187 26.2
VMungo0720G2083 Vigna mungo HOM05D001524 ORTHO05D001392 4.6e-06 56.2 160 25.0
Atru.chr5.2485 Acer truncatum HOM05D001524 ORTHO05D001392 6.0e-06 55.8 142 26.8
Atru.chr5.2495 Acer truncatum HOM05D001524 ORTHO05D001392 6.0e-06 55.8 132 27.3
CANSAT25G2456 Cannabis sativa HOM05D001524 ORTHO05D001392 6.0e-06 55.8 234 23.1
Migut.N01159 Erythranthe guttata HOM05D001524 ORTHO05D001392 6.0e-06 55.8 152 25.7
SGA_v2.0_scaffold13G06615 Striga asiatica HOM05D001524 ORTHO05D001392 6.0e-06 55.8 119 27.7
AT2G15220 Arabidopsis thaliana HOM05D001524 ORTHO05D001392 7.8e-06 55.5 143 27.3
CSS0044640 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 7.8e-06 55.5 119 27.7
CANSAT25G1296 Cannabis sativa HOM05D001524 ORTHO05D001392 7.8e-06 55.5 234 23.1
Lj9P413T36 Lonicera japonica HOM05D001524 ORTHO05D001392 7.8e-06 55.5 183 25.1


User provided reference genes

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