Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1572.4 846 100.0
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1563.1 846 99.4
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1542.7 846 98.1
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1393.6 847 89.5
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1355.9 848 86.8
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1347.0 852 85.0
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1230.7 859 78.0
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1228.0 833 77.6
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1223.8 804 81.5
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1206.8 847 75.0
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1203.3 890 73.3
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1178.3 849 74.7
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1176.0 846 74.9
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1172.1 836 73.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1168.3 855 73.2
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1163.3 844 73.2
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1162.5 849 73.0
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 0.0e+00 1159.4 908 70.3
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 0.0e+00 1159.4 849 71.6
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 833 73.2
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1155.2 857 72.2
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1153.7 846 72.8
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1151.0 835 72.0
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1150.2 860 72.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1149.0 845 72.3
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1149.0 835 71.9
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 789 76.9
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 836 72.5
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 860 71.7
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 835 72.2
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1147.9 857 71.2
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1147.1 849 72.1
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 845 72.0
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 845 73.0
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1143.6 835 71.6
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 846 72.6
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 844 71.8
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 838 72.7
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1140.9 835 71.3
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 846 72.6
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 835 71.9
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 845 74.1
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 845 71.5
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1139.0 845 74.0
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1139.0 851 72.4
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1138.3 835 71.1
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 850 71.8
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 833 73.2
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1130.9 847 73.4
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1130.5 846 73.5
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1130.2 847 73.3
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1129.8 839 72.2
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 847 73.2
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 826 71.1
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1122.5 842 70.7
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1117.4 847 73.0
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 826 71.7
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1116.3 848 70.2
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1115.9 792 72.9
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1115.5 842 70.5
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 847 72.5
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1104.0 850 71.6
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1102.4 842 69.5
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1102.0 842 69.4
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 846 69.7
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 855 69.9
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1094.7 842 71.1
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 845 70.1
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 833 68.9
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1083.9 842 71.1
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1081.2 836 69.5
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1077.0 846 69.4
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 5.8e-312 1074.3 853 69.6
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.7e-311 1072.4 829 68.5
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 1.7e-311 1072.4 842 68.4
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 955 62.9
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 8.7e-311 1070.1 827 69.6
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 8.7e-311 1070.1 831 68.5
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 1.5e-310 1069.3 830 68.8
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 1.7e-309 1065.8 828 68.7
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 1.7e-309 1065.8 883 67.7
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 831 68.4
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 1.8e-308 1062.4 831 68.7
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 3.1e-308 1061.6 828 68.4
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 7.0e-308 1060.4 831 68.2
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 9.1e-308 1060.1 827 68.9
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.9e-306 1055.0 572 95.6
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 9.4e-305 1050.0 856 66.9
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 1.2e-302 1043.1 820 67.6
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 1.5e-302 1042.7 828 69.4
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 5.7e-302 1040.8 820 67.6
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 1.3e-301 1039.6 820 67.4
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 6.1e-296 1020.8 835 63.8
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.5e-294 1016.1 731 71.8
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 4.9e-293 1011.1 835 66.0
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 7.0e-292 1007.3 646 79.4
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.7e-290 1002.7 646 79.1
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.6e-288 996.1 753 72.0
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 7.5e-286 987.3 832 62.6
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 1.4e-284 983.0 807 65.8
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 7.0e-284 980.7 942 61.5
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 4.6e-283 978.0 669 73.8
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 7.3e-281 970.7 669 72.6
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.4e-276 956.4 635 77.5
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 2.7e-275 952.2 837 60.9
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 3.6e-272 941.8 850 56.8
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.4e-271 939.9 812 63.8
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 4.3e-265 918.3 621 73.9
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.2e-259 900.2 845 54.1
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 4.6e-259 898.3 844 54.1
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 2.7e-243 845.9 789 54.2
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 4.9e-237 825.1 792 53.3
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.3e-232 810.4 863 57.6
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.5e-230 803.5 844 58.2
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 2.7e-198 696.4 427 81.5
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 6.8e-170 602.1 480 67.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.9e-156 557.4 438 68.5
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 7.6e-129 465.7 319 74.9
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 7.1e-127 459.1 778 36.0
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.8e-125 454.5 384 63.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 8.7e-125 452.2 306 72.5
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.8e-123 447.2 785 35.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.5e-119 434.1 262 82.8
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 5.3e-106 389.8 387 62.8
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 6.7e-101 372.9 858 30.7
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.7e-96 358.2 278 70.5
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.2e-79 300.8 417 49.9
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 3.5e-57 227.6 224 59.4
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 3.5e-57 227.6 140 80.7
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.1e-47 196.1 125 77.6
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.2e-45 187.2 131 68.7
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 8.6e-40 169.9 142 65.5
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.0e-36 158.7 121 71.9
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-34 152.5 147 55.1
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.9e-34 152.1 147 55.1
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.6e-31 140.6 160 51.9
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 9.6e-15 86.7 70 65.7
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.6e-12 78.6 77 57.1


User provided reference genes

Program Settings