Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.0e-160 570.1 297 100.0
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 6.7e-157 557.4 297 98.7
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.1e-154 550.1 297 97.0
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.7e-147 526.2 299 93.0
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.0e-145 519.2 297 90.9
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.8e-144 515.0 299 87.6
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 2.5e-143 512.3 297 90.6
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 7.2e-143 510.8 297 89.2
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 9.5e-143 510.4 293 91.1
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.6e-142 509.6 298 90.3
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 4.7e-142 508.1 299 86.3
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.0e-141 506.9 294 88.4
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.2e-140 503.4 299 86.0
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.2e-140 503.4 304 86.5
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.0e-140 502.7 284 88.0
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.6e-140 502.3 283 88.7
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.4e-140 501.9 297 84.5
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 4.4e-140 501.5 296 86.8
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 5.7e-140 501.1 282 87.9
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-139 500.0 296 86.8
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.7e-139 499.6 301 86.4
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.7e-139 499.6 299 87.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.2e-139 499.2 299 86.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.7e-139 498.4 297 84.2
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 8.3e-139 497.3 265 93.6
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.4e-138 496.5 303 83.5
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 1.4e-138 496.5 301 85.7
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.4e-138 495.7 299 82.9
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 2.4e-138 495.7 295 86.4
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 3.1e-138 495.4 281 86.8
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 5.4e-138 494.6 295 84.7
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 2.7e-137 492.3 297 82.5
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 4.5e-137 491.5 295 84.1
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 4.5e-137 491.5 300 84.3
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 5.9e-137 491.1 297 83.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.3e-136 490.0 301 84.7
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.7e-136 489.6 302 83.8
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 2.3e-136 489.2 297 83.2
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 2.3e-136 489.2 283 86.2
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.9e-136 488.8 297 83.5
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 2.9e-136 488.8 281 86.1
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 5.0e-136 488.0 300 84.0
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.6e-136 487.6 297 81.5
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 8.6e-136 487.3 296 83.1
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 8.6e-136 487.3 297 82.8
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.1e-135 486.9 299 81.9
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.1e-135 486.9 297 81.1
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.5e-135 486.5 297 81.8
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.9e-135 486.1 282 86.2
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.9e-135 486.1 279 84.9
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-135 486.1 279 84.9
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.9e-135 486.1 279 84.9
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.9e-135 486.1 279 84.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.9e-135 486.1 279 84.9
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.9e-135 486.1 282 85.8
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.9e-135 486.1 298 83.6
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.3e-135 485.3 298 83.6
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 4.3e-135 485.0 297 81.1
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 4.3e-135 485.0 282 85.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 4.3e-135 485.0 297 79.8
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 7.3e-135 484.2 282 85.8
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 7.3e-135 484.2 301 81.1
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 9.5e-135 483.8 297 81.1
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 9.5e-135 483.8 299 84.3
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 9.5e-135 483.8 299 81.3
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 1.6e-134 483.0 279 83.9
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.1e-134 482.6 297 79.8
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 2.1e-134 482.6 281 85.8
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.1e-134 482.6 299 81.6
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.6e-134 481.9 297 84.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 4.7e-134 481.5 297 80.1
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.7e-134 481.5 299 83.3
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 4.7e-134 481.5 299 80.3
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 8.0e-134 480.7 281 84.0
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.0e-133 480.3 309 80.6
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.0e-133 480.3 282 84.0
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.4e-133 479.9 294 86.7
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.4e-133 479.9 299 82.3
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.8e-133 479.6 297 82.5
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.0e-133 478.8 281 84.7
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 3.0e-133 478.8 281 84.3
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 4.0e-133 478.4 282 84.8
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 4.0e-133 478.4 282 83.7
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.9e-133 477.2 282 84.8
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 1.2e-132 476.9 275 85.8
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 1.5e-132 476.5 282 84.4
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.6e-132 475.7 298 81.2
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 2.6e-132 475.7 280 84.6
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 4.4e-132 474.9 291 81.4
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 4.4e-132 474.9 297 81.1
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.8e-132 474.6 282 84.0
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.3e-131 473.4 298 80.5
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 2.2e-131 472.6 282 84.4
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 2.9e-131 472.2 291 80.1
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.7e-131 471.9 280 83.9
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 3.7e-131 471.9 297 80.5
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 6.4e-131 471.1 295 80.7
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.2e-130 468.8 281 83.3
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 6.0e-129 464.5 281 81.5
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 6.0e-129 464.5 280 82.5
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 7.8e-129 464.2 297 78.5
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.7e-128 463.0 284 82.0
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 3.9e-128 461.8 293 79.9
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 2.5e-127 459.1 282 82.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.8e-126 455.7 312 76.0
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 3.6e-126 455.3 282 81.6
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 4.7e-126 454.9 281 81.5
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.0e-126 454.1 267 86.1
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.1e-125 453.8 282 81.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.4e-125 453.4 281 81.1
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 6.8e-125 451.1 309 75.1
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 8.9e-125 450.7 283 80.9
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 8.9e-125 450.7 326 75.2
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 8.9e-125 450.7 267 83.9
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.6e-124 449.1 287 77.7
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 2.9e-123 445.7 297 76.1
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 2.9e-123 445.7 293 77.1
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 1.1e-122 443.7 301 79.4
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.4e-122 443.4 299 75.3
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.2e-122 442.2 385 65.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.2e-118 430.3 263 81.7
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.6e-116 422.5 253 83.4
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-115 419.9 289 74.4
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.9e-114 416.4 221 91.9
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.0e-112 410.6 221 90.5
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.3e-112 410.2 252 81.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 5.6e-111 404.8 281 74.7
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-108 396.7 218 88.5
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.5e-108 396.7 218 88.5
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.8e-107 392.1 272 69.9
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.7e-105 386.0 250 74.0
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.7e-104 383.3 251 73.7
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 8.7e-104 380.9 279 67.4
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.6e-102 375.6 302 68.5
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 4.4e-100 368.6 200 89.0
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.9e-99 365.9 286 64.0
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.6e-97 360.1 220 81.4
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.1e-97 359.8 215 85.6
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 3.2e-90 335.9 182 90.7
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 7.1e-90 334.7 182 89.0
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-87 327.4 208 80.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.7e-81 306.2 174 86.2
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.0e-80 304.3 181 82.9
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.6e-78 297.0 221 73.3
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 3.9e-72 275.8 152 89.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.2e-65 254.2 194 66.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.2e-62 241.5 146 80.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 7.7e-60 235.0 209 62.7
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 6.7e-48 195.3 119 76.5
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.7e-46 189.5 231 47.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 5.3e-45 185.7 158 62.7
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 2.6e-44 183.3 177 59.3
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 7.7e-44 181.8 136 69.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 3.6e-41 172.9 105 78.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.0e-36 157.1 86 86.0
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-35 154.1 96 76.0
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.3e-30 137.9 88 76.1
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 2.8e-30 136.7 304 32.2
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-27 127.9 196 44.9
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.9e-26 124.0 96 68.8
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 2.1e-25 120.6 66 87.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 2.1e-25 120.6 66 87.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.4e-24 117.9 170 42.4
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 2.1e-17 94.0 158 41.1
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 6.8e-16 89.0 53 79.2
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.2e-15 88.2 63 73.0
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.2e-15 88.2 63 73.0
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-15 87.8 84 56.0
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 2.2e-14 84.0 79 55.7
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 6.4e-14 82.4 77 77.9
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 7.8e-12 75.5 92 47.8
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.3e-11 73.9 63 57.1
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.5e-10 71.2 110 40.9
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 4.3e-10 69.7 103 40.8
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 5.6e-10 69.3 50 68.0
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.1e-08 63.5 43 74.4
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 5.2e-08 62.8 57 52.6
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 2.6e-07 60.5 42 73.8
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.6e-07 60.5 34 79.4
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.9e-06 57.0 31 77.4
MCO17G054 Micromonas commoda HOM05D003815 ORTHO05D270498 6.4e-06 55.8 142 31.7
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 8.3e-06 55.5 38 71.1


User provided reference genes

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