Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.1e-118 429.9 205 100.0
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.1e-118 429.9 205 100.0
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 6.2e-109 397.5 205 92.2
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 1.8e-108 396.0 205 90.7
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 3.3e-102 375.2 203 87.7
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.2e-101 373.2 205 86.8
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 1.7e-95 352.8 205 81.0
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.8e-76 289.7 202 71.3
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.8e-76 289.7 205 70.2
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 4.9e-74 281.6 209 67.5
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.9e-73 279.6 209 67.0
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 3.2e-73 278.9 202 67.3
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 2.7e-72 275.8 203 67.0
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 7.9e-72 274.2 206 68.0
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 5.1e-71 271.6 208 67.3
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.5e-70 270.0 204 65.7
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 3.3e-70 268.9 206 66.5
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 5.6e-70 268.1 196 67.3
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 5.6e-70 268.1 203 67.0
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 7.4e-70 267.7 207 66.7
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 1.3e-69 266.9 202 65.8
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 1.6e-69 266.5 203 65.5
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.6e-69 266.5 203 66.5
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 2.8e-69 265.8 204 66.2
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 3.7e-69 265.4 203 66.0
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 4.8e-69 265.0 208 65.9
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.4e-68 263.5 216 62.5
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 1.8e-68 263.1 210 62.9
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 2.4e-68 262.7 204 65.2
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 4.0e-68 261.9 203 66.0
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 9.0e-68 260.8 223 61.9
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.5e-67 260.0 229 60.7
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.5e-67 260.0 229 61.6
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 1.5e-67 260.0 202 62.4
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.5e-67 260.0 203 66.0
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 2.6e-67 259.2 208 62.0
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 3.4e-67 258.8 202 62.4
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 4.5e-67 258.5 205 62.9
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 5.8e-67 258.1 195 63.6
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 7.6e-67 257.7 213 60.1
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.0e-66 257.3 198 65.7
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 1.3e-66 256.9 211 64.0
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 1.3e-66 256.9 208 63.5
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 2.2e-66 256.1 208 62.0
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 2.2e-66 256.1 203 64.5
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 2.2e-66 256.1 207 61.8
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 2.9e-66 255.8 203 63.5
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 2.9e-66 255.8 206 64.6
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 6.5e-66 254.6 198 63.1
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.4e-65 253.4 204 64.2
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 1.9e-65 253.1 195 66.7
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 2.5e-65 252.7 207 62.3
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 3.2e-65 252.3 208 62.0
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 5.5e-65 251.5 209 61.7
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 9.3e-65 250.8 208 61.1
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 1.2e-64 250.4 211 61.1
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.6e-64 250.0 208 63.0
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 3.5e-64 248.8 195 62.1
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 4.6e-64 248.4 203 61.1
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 1.0e-63 247.3 211 59.7
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.3e-63 246.9 201 62.2
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 3.0e-63 245.7 199 60.8
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 3.0e-63 245.7 206 61.2
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.5e-62 243.4 201 60.7
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.9e-62 243.0 201 61.2
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 3.3e-62 242.3 201 60.7
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 4.3e-62 241.9 215 58.1
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 5.7e-62 241.5 210 60.5
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.6e-61 240.0 199 59.8
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 2.1e-61 239.6 197 60.9
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 2.8e-61 239.2 202 59.9
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 8.2e-61 237.7 210 60.0
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.1e-60 237.3 199 59.3
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 1.1e-60 237.3 201 59.2
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 1.4e-60 236.9 199 58.3
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 1.4e-60 236.9 199 58.3
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 1.4e-60 236.9 191 61.8
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.8e-60 236.5 196 60.7
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 2.4e-60 236.1 201 58.7
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 4.1e-60 235.3 203 58.1
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 4.1e-60 235.3 204 58.3
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 1.5e-59 233.4 204 57.4
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 2.0e-59 233.0 204 57.8
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 3.4e-59 232.3 202 61.9
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 7.6e-59 231.1 197 59.4
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 7.6e-59 231.1 201 58.2
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 3.8e-58 228.8 205 57.1
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.8e-58 228.8 200 57.5
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 1.1e-57 227.3 190 61.6
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 2.7e-56 222.6 234 53.0
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.8e-55 219.9 200 54.5
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 6.7e-55 218.0 207 54.6
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 1.9e-54 216.5 162 70.4
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 2.5e-54 216.1 200 54.5
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 1.6e-53 213.4 203 54.7
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 9.1e-52 207.6 173 59.5
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 2.2e-50 203.0 187 57.8
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 3.8e-50 202.2 173 60.1
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 3.1e-44 182.6 174 55.7
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 3.8e-42 175.6 155 59.4
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 5.0e-42 175.3 155 56.8
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 2.1e-40 169.9 157 58.6
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 2.1e-40 169.9 207 46.4
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.3e-39 166.4 206 45.1
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 5.2e-39 165.2 157 54.8
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 5.2e-39 165.2 123 68.3
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 1.1e-38 164.1 191 45.0
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 1.1e-38 164.1 117 65.8
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 2.8e-37 159.5 242 41.3
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 2.2e-34 149.8 117 60.7
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.3e-31 139.8 151 48.3
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 2.2e-26 123.2 110 53.6
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 1.4e-23 114.0 122 53.3
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 9.1e-20 101.3 125 45.6
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.5e-19 99.4 125 44.8
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.3e-18 97.4 64 71.9
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 4.4e-14 82.4 58 72.4
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 1.4e-12 77.4 51 68.6
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 6.6e-10 68.6 146 32.9
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 8.0e-08 61.6 84 41.7
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 5.2e-07 58.9 68 47.1
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.5e-06 57.4 69 36.2


User provided reference genes

Program Settings