Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 1.8e-142 509.2 252 100.0
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.5e-141 506.1 252 99.2
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 2.0e-141 505.8 252 99.2
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.9e-140 501.9 252 98.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 9.2e-139 496.9 252 96.4
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 4.0e-134 481.5 252 91.7
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 7.5e-133 477.2 252 90.5
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 6.4e-132 474.2 252 90.1
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.4e-131 473.0 252 90.1
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.4e-131 473.0 250 90.4
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.9e-131 472.6 252 89.3
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 2.4e-131 472.2 238 97.1
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.2e-130 469.9 252 88.9
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.1e-130 469.2 252 88.9
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 4.6e-130 468.0 252 88.5
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.7e-129 466.1 252 88.5
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 3.3e-128 461.8 249 88.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 9.5e-128 460.3 249 88.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.1e-127 459.1 251 87.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 6.2e-127 457.6 250 86.8
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.8e-126 456.1 252 90.5
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 2.3e-126 455.7 250 86.8
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 3.1e-126 455.3 249 87.1
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 4.0e-126 454.9 250 86.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 4.0e-126 454.9 250 86.4
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.0e-126 454.9 250 86.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 8.9e-126 453.8 250 86.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.2e-125 453.4 250 85.6
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 1.2e-125 453.4 250 88.4
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.2e-125 453.4 272 81.6
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.0e-125 452.6 250 85.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 3.4e-125 451.8 252 85.7
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 5.8e-125 451.1 251 85.7
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 7.5e-125 450.7 249 84.7
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 7.5e-125 450.7 250 88.0
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.3e-124 449.9 250 86.4
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.3e-124 449.9 250 85.2
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 2.2e-124 449.1 249 86.7
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 86.9
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 2.9e-124 448.7 250 84.4
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.9e-124 448.7 252 84.9
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.9e-124 448.7 252 86.1
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 3.7e-124 448.4 250 86.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 4.9e-124 448.0 246 86.2
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 6.4e-124 447.6 252 84.9
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.4e-124 447.6 258 83.3
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 8.3e-124 447.2 250 85.6
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.1e-123 446.8 255 85.9
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.4e-123 446.4 250 86.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.9e-123 446.0 249 84.7
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 3.2e-123 445.3 251 86.1
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 4.1e-123 444.9 249 85.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 5.4e-123 444.5 249 84.3
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 5.4e-123 444.5 250 84.8
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 7.1e-123 444.1 249 86.3
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 7.1e-123 444.1 250 86.8
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 9.2e-123 443.7 250 84.4
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.2e-122 443.4 250 85.2
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 1.2e-122 443.4 250 85.2
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.2e-122 443.4 250 86.0
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.2e-122 443.4 270 81.9
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.6e-122 443.0 249 85.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.6e-122 443.0 249 85.9
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.1e-122 442.6 249 83.5
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 3.5e-122 441.8 250 85.6
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 3.5e-122 441.8 250 85.6
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 3.5e-122 441.8 249 83.9
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 4.6e-122 441.4 250 85.2
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 6.0e-122 441.0 250 85.6
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 6.0e-122 441.0 250 85.6
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 6.0e-122 441.0 250 86.4
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.0e-121 440.3 250 85.2
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 1.0e-121 440.3 244 86.9
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.3e-121 439.9 250 85.2
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.7e-121 439.5 250 86.0
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 2.3e-121 439.1 250 85.2
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 2.3e-121 439.1 250 85.2
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 8.6e-121 437.2 252 83.3
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 8.6e-121 437.2 251 82.1
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.9e-120 436.0 244 86.1
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 2.5e-120 435.6 249 84.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 9.5e-120 433.7 250 84.4
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.6e-119 433.0 233 89.3
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 3.6e-119 431.8 248 83.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 3.6e-119 431.8 296 74.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 4.7e-119 431.4 250 84.4
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.8e-118 429.5 297 73.4
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.0e-117 426.0 363 63.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.3e-116 423.3 234 85.5
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.4e-115 419.9 252 78.6
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.3e-113 413.3 249 79.9
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.7e-113 412.9 250 80.4
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 3.9e-113 411.8 257 80.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.5e-112 409.8 249 79.1
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 2.6e-109 399.1 244 75.8
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 4.6e-106 388.3 222 83.8
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 3.3e-104 382.1 242 73.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 8.1e-103 377.5 243 74.5
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.6e-101 370.9 239 74.9
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 7.6e-101 370.9 213 83.1
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.2e-98 363.6 237 76.4
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.2e-98 363.6 251 71.3
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 4.6e-98 361.7 250 71.2
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 2.1e-95 352.8 251 71.3
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 6.4e-92 341.3 238 67.6
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.7e-89 330.9 206 77.7
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.2e-87 324.7 194 81.4
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 5.3e-86 321.6 187 84.0
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.0e-85 319.7 183 80.9
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.1e-83 313.9 325 53.2
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 5.0e-76 288.5 240 55.8
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 4.2e-75 285.4 209 67.9
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 6.7e-73 278.1 184 73.9
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.7e-71 273.5 151 86.1
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 4.8e-71 271.9 198 72.2
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 8.5e-68 261.2 249 51.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 9.4e-67 257.7 152 80.9
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.4e-65 253.8 211 65.4
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 8.0e-58 228.0 250 52.8
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.1e-54 217.6 130 81.5
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.2e-50 204.1 120 82.5
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.0e-49 199.1 99 96.0
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.0e-48 196.8 249 46.2
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.5e-43 180.6 99 83.8
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.1e-42 176.8 99 81.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.3e-41 173.3 158 60.8
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 4.0e-41 172.6 99 80.8
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.7e-39 167.2 253 34.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 8.3e-39 164.9 99 78.8
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.8e-36 156.0 98 82.7
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 7.0e-22 108.6 103 57.3
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 7.3e-19 98.6 69 63.8
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.2e-15 87.0 137 43.8
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.9e-14 84.0 55 74.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.6e-13 80.9 44 77.3
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 5.1e-12 75.9 56 62.5
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 6.8e-09 65.5 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 3.4e-08 63.2 55 63.6


User provided reference genes

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