Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.9e-226 788.9 408 100.0
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.5e-226 788.5 408 99.8
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.8e-216 755.7 404 97.5
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 7.7e-212 740.3 410 93.7
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.8e-192 674.1 410 87.3
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.0e-184 648.3 415 84.1
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 6.8e-184 647.5 411 82.2
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 6.0e-180 634.4 413 79.9
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 6.0e-180 634.4 411 81.0
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.3e-179 633.3 411 82.0
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.0e-179 632.1 406 81.0
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.1e-178 630.2 409 80.0
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.5e-178 629.8 411 80.5
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 5.6e-178 627.9 412 80.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 9.5e-178 627.1 412 80.6
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.4e-176 623.2 414 80.7
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.3e-176 622.5 412 79.9
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 9.9e-175 617.1 413 78.7
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 3.7e-174 615.1 410 79.0
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 6.4e-174 614.4 413 79.2
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.1e-173 613.6 410 79.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.4e-173 613.2 412 78.9
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.9e-173 612.8 415 78.8
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 5.4e-173 611.3 412 78.6
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.2e-172 610.1 410 78.3
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.7e-172 609.0 410 77.8
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 6.0e-172 607.8 412 78.2
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.8e-172 607.4 410 78.3
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.3e-171 606.7 414 77.5
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 5.1e-171 604.7 419 76.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.1e-171 604.7 423 76.1
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 8.6e-171 604.0 416 77.4
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.1e-170 603.6 411 76.4
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.5e-170 603.2 413 77.2
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.9e-170 602.8 414 77.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 3.3e-170 602.1 413 77.0
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 3.3e-170 602.1 413 77.2
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.5e-170 600.5 408 77.9
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.2e-169 600.1 415 76.6
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.2e-169 600.1 411 76.6
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 2.1e-169 599.4 411 77.4
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.7e-169 598.2 411 76.4
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 4.7e-169 598.2 409 77.0
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 6.2e-169 597.8 415 76.9
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 8.1e-169 597.4 408 77.0
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.4e-168 596.7 408 76.7
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.4e-168 596.7 412 77.4
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.0e-168 595.1 415 75.7
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 6.8e-168 594.3 419 75.2
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.5e-167 593.2 413 76.5
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 3.4e-167 592.0 412 75.7
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 7.6e-167 590.9 431 73.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 7.6e-167 590.9 408 76.0
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 9.9e-167 590.5 429 73.9
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.9e-166 589.0 413 76.0
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 3.8e-166 588.6 411 75.7
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.1e-165 587.0 410 73.7
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.1e-165 587.0 409 76.0
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 2.4e-165 585.9 410 73.9
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 3.2e-165 585.5 411 73.7
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 7.1e-165 584.3 412 75.7
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.2e-164 583.6 411 75.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.6e-164 583.2 416 74.5
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.1e-164 582.8 411 74.5
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 2.7e-164 582.4 415 73.3
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 1.0e-163 580.5 415 73.5
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.0e-163 580.5 412 74.3
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.0e-163 580.5 412 75.0
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.3e-163 579.3 412 74.0
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 8.7e-163 577.4 409 75.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-162 577.0 411 74.0
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.9e-162 576.2 412 75.0
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 2.5e-162 575.9 419 72.1
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.5e-162 575.9 409 73.3
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.3e-162 575.5 412 74.0
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 4.3e-162 575.1 412 74.0
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 5.6e-162 574.7 419 73.3
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 7.3e-162 574.3 425 73.4
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.6e-162 573.9 412 73.3
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 9.6e-162 573.9 411 74.2
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 9.6e-162 573.9 411 73.5
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.2e-161 573.5 412 74.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 4.7e-161 571.6 412 74.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.7e-161 571.6 449 70.4
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 8.1e-161 570.9 409 73.3
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 8.1e-161 570.9 410 72.2
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.1e-160 570.5 355 84.5
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.8e-160 569.7 421 72.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.4e-159 565.5 412 72.8
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.4e-159 565.1 423 72.3
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.2e-158 562.8 414 72.5
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.2e-158 562.8 423 72.1
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.3e-157 557.4 443 68.8
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.6e-156 556.6 443 69.1
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.8e-156 554.3 424 68.9
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.3e-155 552.7 415 70.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 6.6e-155 551.2 418 70.6
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 8.1e-153 544.3 360 80.3
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 6.9e-152 541.2 390 72.6
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 6.4e-150 534.6 338 82.2
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.0e-147 527.3 415 68.0
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.5e-146 523.5 477 63.1
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.5e-146 523.5 477 63.1
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.4e-144 516.2 413 69.0
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 3.1e-144 515.8 348 76.7
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.0e-143 513.1 362 75.7
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.0e-143 513.1 362 75.7
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 5.5e-141 505.0 357 74.8
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.8e-137 492.7 417 65.9
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.8e-136 490.0 316 78.8
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 9.3e-133 477.6 416 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 9.7e-130 467.6 424 58.5
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.0e-126 457.6 412 63.1
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 3.0e-123 446.0 424 61.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 9.7e-114 414.5 371 58.5
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 2.8e-113 412.9 405 59.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.9e-110 402.9 273 78.0
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 7.7e-103 378.3 324 66.4
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.7e-97 360.5 358 58.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 5.3e-96 355.5 333 60.1
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 3.7e-89 332.8 415 47.5
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.6e-84 317.4 316 54.4
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.4e-80 304.3 426 43.0
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 9.2e-72 275.0 464 39.2
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 6.0e-71 272.3 262 59.2
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 2.4e-64 250.4 473 35.9
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 4.6e-55 219.5 134 82.1
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.8e-55 218.8 326 43.3
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.9e-54 216.5 129 79.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.2e-49 200.7 341 36.1
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.4e-48 198.0 342 37.1
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.8e-44 183.7 103 82.5
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.1e-44 182.2 103 81.6
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.2e-40 169.9 131 65.6
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.0e-38 165.2 316 35.4
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 9.6e-37 158.7 109 74.3
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 9.0e-35 152.1 98 79.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.4e-32 142.9 142 58.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.5e-24 116.3 132 50.8
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 4.6e-23 113.2 65 84.6
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.0e-22 110.5 99 56.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 8.2e-20 102.4 109 56.9
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.2e-18 98.6 127 47.2
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.5e-18 96.7 78 64.1
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.9e-13 81.3 56 73.2
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 3.3e-13 80.5 49 79.6
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.6e-12 78.2 96 53.1
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.2e-12 77.8 96 43.8
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 4.8e-12 76.6 52 71.2
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 4.1e-11 73.6 44 77.3
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.7e-09 68.2 70 60.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 8.5e-09 65.9 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 8.5e-09 65.9 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 8.5e-09 65.9 36 83.3
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.1e-08 65.5 43 74.4
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.9e-08 64.7 31 90.3
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 3.2e-08 63.9 42 76.2
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 3.2e-08 63.9 130 30.0
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 4.2e-08 63.5 130 30.0
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 4.2e-08 63.5 130 30.0
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 5.5e-08 63.2 130 30.0
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-07 61.6 36 83.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-07 61.6 161 28.0
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 2.1e-07 61.2 61 57.4
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 3.6e-07 60.5 158 26.6
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 7.9e-07 59.3 37 75.7
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 1.0e-06 58.9 56 57.1
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 8.8e-06 55.8 90 47.8
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 55.8 176 27.8


User provided reference genes

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