Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 0.0e+00 1545.0 822 100.0
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 0.0e+00 1484.2 845 94.9
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 0.0e+00 1371.7 847 89.0
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 0.0e+00 1238.4 842 81.6
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 0.0e+00 1169.5 850 77.4
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 0.0e+00 1161.7 850 77.4
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 8.9e-292 1006.9 825 70.8
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 2.5e-129 467.2 908 41.3
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 1.8e-122 444.5 883 41.4
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.0e-122 443.7 938 39.8
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 6.7e-122 442.6 939 40.3
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 4.5e-118 429.9 870 40.8
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 6.5e-117 426.0 919 40.0
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.5e-113 414.8 923 39.1
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 5.7e-113 412.9 959 38.8
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 9.7e-113 412.1 929 39.3
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 9.7e-113 412.1 940 38.3
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 1.3e-112 411.8 928 38.6
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 4.1e-111 406.8 862 39.6
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.3e-109 401.7 915 39.1
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 1.3e-109 401.7 798 41.4
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 2.9e-109 400.6 846 37.4
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 3.2e-108 397.1 904 37.8
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 7.2e-108 396.0 924 38.7
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.2e-107 395.2 931 37.8
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 3.0e-106 390.6 941 36.5
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 3.9e-106 390.2 919 37.9
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.9e-106 390.2 957 37.0
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 5.2e-106 389.8 913 37.1
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 6.7e-106 389.4 936 37.1
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 8.8e-106 389.0 911 38.9
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 7.4e-105 386.0 921 38.0
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.7e-104 384.8 899 38.8
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 7.0e-103 379.4 898 38.5
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 1.6e-102 378.3 828 38.9
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.3e-101 375.2 902 36.9
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.3e-101 375.2 908 38.0
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.7e-101 374.8 941 36.8
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.9e-101 374.0 904 37.6
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.1e-100 372.1 904 37.8
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.2e-100 369.4 902 36.7
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 4.7e-99 366.7 962 37.1
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 8.0e-99 365.9 781 40.1
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 8.0e-99 365.9 908 37.3
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.0e-98 364.0 899 36.5
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.3e-96 358.6 787 39.1
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 1.3e-96 358.6 848 36.4
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 4.8e-96 356.7 878 36.8
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 6.3e-96 356.3 927 36.7
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.1e-95 355.5 904 35.5
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 2.9e-93 347.4 908 36.8
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 2.9e-93 347.4 933 36.4
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 2.5e-92 344.4 821 37.1
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 4.2e-92 343.6 962 35.6
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 4.2e-92 343.6 922 36.1
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 3.6e-91 340.5 842 36.9
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 8.0e-91 339.3 920 35.2
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 3.0e-90 337.4 952 35.4
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 5.2e-90 336.7 931 34.8
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 9.8e-89 332.4 892 36.0
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.7e-88 331.6 909 35.3
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 2.8e-88 330.9 825 36.8
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 1.1e-87 328.9 943 35.0
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 3.1e-87 327.4 886 35.6
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 2.0e-86 324.7 911 35.6
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 3.8e-85 320.5 897 34.3
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 3.8e-85 320.5 961 35.2
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 8.6e-85 319.3 864 34.8
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 8.6e-85 319.3 938 36.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 1.5e-84 318.5 926 35.0
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 2.5e-84 317.8 909 35.5
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.5e-84 317.8 991 33.9
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 7.2e-84 316.2 936 34.7
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.2e-80 304.7 925 34.9
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 1.6e-78 298.5 848 35.3
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 3.9e-77 293.9 883 34.4
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 5.0e-77 293.5 833 35.4
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 7.3e-76 289.7 899 34.8
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 6.1e-75 286.6 901 32.6
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 6.8e-74 283.1 894 33.0
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 8.9e-74 282.7 934 33.1
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 1.5e-73 282.0 933 32.6
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 2.0e-73 281.6 926 32.7
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.6e-73 281.2 907 32.9
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 2.6e-73 281.2 899 32.3
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 9.8e-73 279.3 899 32.1
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 2.9e-72 277.7 865 32.6
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 4.9e-72 276.9 770 35.6
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 4.1e-71 273.9 821 35.6
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 6.0e-70 270.0 911 32.8
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 6.0e-70 270.0 809 33.3
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 7.8e-70 269.6 888 33.8
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.0e-69 269.2 888 33.8
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 3.9e-69 267.3 921 31.9
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.5e-68 265.4 974 30.5
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 7.3e-68 263.1 905 30.6
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 3.1e-66 257.7 890 32.9
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 1.2e-65 255.8 892 31.1
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 2.6e-65 254.6 1020 32.2
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 1.7e-64 251.9 718 36.1
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 6.4e-64 250.0 845 32.9
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.5e-62 244.2 859 32.6
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 7.3e-60 236.5 898 30.8
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 8.1e-59 233.0 909 30.9
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 2.7e-54 218.0 890 30.6
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.0e-54 216.9 764 31.3
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 3.3e-52 211.1 1034 28.4
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.4e-47 194.9 382 41.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 7.1e-47 193.4 148 68.9
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 4.6e-46 190.7 256 51.6
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.1e-44 186.0 416 35.1
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 9.6e-44 183.0 416 34.9
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 2.1e-43 181.8 850 29.2
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 3.8e-40 171.0 838 29.1
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 4.8e-35 154.1 155 57.4
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 1.8e-34 152.1 221 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 6.0e-30 137.1 985 26.0
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 5.1e-29 134.0 154 50.6
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.5e-25 122.5 161 46.6
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 8.2e-19 100.1 97 60.8
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 9.0e-18 96.7 286 37.4
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 5.8e-17 94.0 938 23.7
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 4.2e-15 87.8 73 58.9
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 9.3e-15 86.7 192 33.9
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 1.2e-14 86.3 223 33.6
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.9e-12 79.0 439 31.2
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 7.4e-12 77.0 789 24.2
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 2.8e-11 75.1 166 31.9
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 7.9e-06 57.0 41 56.1


User provided reference genes

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