Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.9e-145 518.1 255 100.0
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.8e-142 509.2 255 98.0
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.8e-108 395.2 272 76.5
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.7e-106 389.0 271 76.4
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 3.3e-96 355.5 238 75.6
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.3e-87 327.0 196 79.6
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 2.6e-80 302.8 250 61.2
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 4.4e-80 302.0 184 76.6
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.4e-78 297.0 193 71.5
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 5.4e-78 295.0 193 71.0
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 4.5e-77 292.0 182 75.3
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.0e-76 290.8 182 75.3
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.3e-76 290.4 198 71.7
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.3e-76 289.7 184 73.9
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.9e-76 289.3 182 74.2
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.5e-75 287.0 182 70.9
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.5e-75 286.2 193 73.1
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 7.2e-75 284.6 192 70.3
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 7.2e-75 284.6 190 68.9
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.2e-74 283.9 193 72.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.2e-74 283.9 182 72.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.2e-74 283.9 180 72.8
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.8e-74 282.7 185 72.4
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.6e-74 282.3 180 73.9
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 4.7e-74 282.0 193 69.4
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.0e-73 280.8 180 71.7
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.0e-73 280.8 181 71.3
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.3e-73 279.6 195 67.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 2.3e-73 279.6 194 66.5
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 2.3e-73 279.6 185 70.3
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 2.3e-73 279.6 185 71.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.3e-73 279.6 180 73.9
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 3.0e-73 279.3 193 71.0
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 3.0e-73 279.3 181 72.9
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 4.0e-73 278.9 213 67.1
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 5.2e-73 278.5 182 73.1
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 5.2e-73 278.5 193 68.9
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.2e-72 277.3 180 72.8
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.5e-72 276.9 187 69.5
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.6e-72 276.2 193 68.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 3.4e-72 275.8 184 70.7
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 9.8e-72 274.2 182 71.4
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.3e-71 273.9 194 69.1
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.2e-71 273.1 181 71.8
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.2e-71 273.1 181 71.8
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.8e-71 272.7 183 72.1
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.8e-71 272.7 193 71.0
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 6.3e-71 271.6 215 59.5
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 8.3e-71 271.2 183 70.5
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.1e-70 270.8 185 70.8
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.4e-70 270.4 168 73.2
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 5.4e-70 268.5 180 69.4
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 5.4e-70 268.5 165 77.6
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.7e-69 266.2 182 69.8
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.7e-69 266.2 181 70.2
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.7e-69 266.2 181 69.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.5e-69 265.8 181 70.2
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 4.5e-69 265.4 182 69.8
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 5.9e-69 265.0 181 66.9
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 7.8e-69 264.6 193 65.3
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 7.8e-69 264.6 178 69.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.0e-68 264.2 178 70.8
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.3e-68 263.8 181 69.6
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.3e-68 263.8 261 54.0
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.7e-68 263.5 182 67.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.7e-68 263.5 182 67.0
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.3e-68 263.1 182 65.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.9e-68 262.7 160 75.0
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.9e-68 262.7 184 66.8
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.9e-67 260.0 181 67.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.5e-67 259.6 183 68.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.3e-67 258.8 191 65.4
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 5.6e-67 258.5 193 64.8
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 9.5e-67 257.7 165 71.5
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 2.1e-66 256.5 193 64.8
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 4.7e-66 255.4 182 66.5
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 8.0e-66 254.6 193 64.8
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 8.0e-66 254.6 193 64.8
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.0e-65 254.2 182 63.7
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.0e-65 254.2 182 63.7
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.8e-65 253.4 181 68.0
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.1e-65 252.7 196 63.3
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 4.0e-65 252.3 167 71.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.2e-65 251.9 182 65.9
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.2e-64 250.8 184 66.3
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 4.4e-64 248.8 178 65.7
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.9e-63 246.1 179 64.2
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 4.9e-63 245.4 197 60.4
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 8.3e-63 244.6 219 56.2
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 2.4e-62 243.0 193 58.5
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 2.4e-62 243.0 204 59.8
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.2e-61 240.7 205 60.5
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.7e-61 239.6 175 66.3
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 2.7e-61 239.6 176 59.7
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 4.6e-61 238.8 179 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 7.8e-61 238.0 181 62.4
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.5e-59 233.8 196 57.1
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.6e-58 230.3 182 62.6
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 8.1e-58 228.0 181 60.2
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.1e-57 227.6 162 65.4
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 6.8e-57 224.9 184 59.8
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.4e-56 222.6 194 57.2
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 5.8e-56 221.9 204 53.4
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.7e-55 220.3 187 56.1
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.7e-55 219.2 149 69.1
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 4.6e-53 212.2 136 72.8
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 3.9e-52 209.1 161 62.7
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.1e-52 208.8 161 65.2
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.5e-51 207.2 175 58.3
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 3.3e-51 206.1 185 53.5
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.6e-50 202.6 203 50.7
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.1e-49 199.5 168 56.5
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.8e-49 198.4 166 56.6
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.2e-48 197.6 132 68.2
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 2.0e-48 196.8 175 57.1
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-48 196.1 168 56.5
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 7.6e-48 194.9 135 70.4
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 6.4e-47 191.8 112 76.8
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 5.4e-46 188.7 133 62.4
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.1e-46 188.3 152 59.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.5e-45 186.0 163 54.6
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.2e-41 172.2 136 58.8
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 1.6e-37 160.6 181 47.0
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-37 159.8 125 60.8
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 3.5e-37 159.5 195 45.1
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-36 157.1 167 47.9
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 5.1e-36 155.6 119 63.9
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 7.3e-35 151.8 113 61.9
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-34 149.8 180 46.7
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 3.6e-34 149.4 99 69.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 4.0e-33 146.0 192 41.7
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 5.1e-28 129.0 117 57.3
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.5e-27 127.5 90 65.6
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 5.3e-25 119.0 199 34.7
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-23 113.2 96 54.2
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 7.1e-14 82.0 57 73.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 5.1e-12 75.9 107 43.0
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.5e-11 73.6 49 71.4
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-11 72.8 53 60.4
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-09 68.2 47 68.1
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.8e-09 67.4 45 68.9
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-09 67.4 64 53.1
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 2.5e-06 57.0 50 58.0


User provided reference genes

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