Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 6.8e-290 1000.0 512 100.0
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 2.9e-280 968.0 506 98.6
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.9e-169 598.2 529 65.4
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.2e-162 575.9 447 73.4
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 8.9e-157 557.8 538 61.3
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 8.9e-157 557.8 500 64.4
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.4e-117 427.6 319 72.1
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.5e-108 397.5 557 46.3
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 6.3e-102 375.6 502 47.2
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 5.3e-101 372.5 493 47.7
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.5e-100 370.9 516 46.7
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 1.4e-98 364.4 543 46.2
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 1.6e-97 360.9 515 46.0
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 3.6e-97 359.8 571 43.4
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.8e-96 357.5 598 39.6
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 8.8e-96 355.1 571 40.8
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 1.3e-94 351.3 577 41.2
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 3.7e-94 349.7 494 46.0
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.1e-93 348.2 418 49.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 5.3e-93 345.9 491 45.2
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 1.2e-92 344.7 411 49.6
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 4.5e-92 342.8 487 45.6
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.0e-91 341.7 544 43.8
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.3e-91 341.3 500 44.6
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.3e-91 341.3 526 43.9
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.7e-91 340.9 470 44.5
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.2e-91 340.5 509 43.2
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 3.8e-91 339.7 491 44.8
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.5e-90 337.0 492 45.1
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 3.2e-90 336.7 527 42.7
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.2e-89 334.7 525 43.0
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 4.7e-89 332.8 304 57.9
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.8e-88 330.9 527 42.9
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 8.8e-88 328.6 524 42.9
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 4.4e-87 326.2 403 50.4
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 2.8e-86 323.6 459 46.0
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 8.2e-86 322.0 466 45.3
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 8.2e-86 322.0 466 45.3
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 8.2e-86 322.0 466 45.3
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 3.1e-85 320.1 494 43.1
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 3.1e-85 320.1 337 54.0
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 1.2e-84 318.2 469 44.8
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.2e-84 318.2 452 45.1
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 1.2e-84 318.2 228 79.8
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 5.9e-84 315.8 440 45.7
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 3.8e-83 313.2 464 44.0
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 5.0e-83 312.8 482 42.1
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 8.5e-83 312.0 470 44.7
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 1.1e-82 311.6 492 41.9
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 2.5e-82 310.5 469 43.1
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 3.2e-82 310.1 452 43.8
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 5.5e-82 309.3 464 42.9
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 5.5e-82 309.3 442 44.8
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 1.2e-81 308.1 440 45.5
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 3.6e-81 306.6 513 39.4
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 8.0e-81 305.4 483 42.2
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.8e-80 304.3 386 47.4
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 2.3e-80 303.9 448 44.2
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 5.2e-80 302.8 409 45.5
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 6.7e-80 302.4 455 43.5
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 6.7e-80 302.4 423 44.2
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 8.8e-80 302.0 406 45.8
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.2e-79 301.6 540 39.1
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 9.7e-79 298.5 464 42.7
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 4.1e-77 293.1 421 42.0
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 2.7e-76 290.4 485 42.1
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.2e-75 287.3 294 59.5
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.9e-75 287.0 505 39.8
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 3.8e-75 286.6 482 42.9
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 3.8e-75 286.6 669 35.0
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 5.0e-75 286.2 318 51.6
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.5e-74 284.6 392 46.7
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 9.4e-74 282.0 550 37.8
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 2.1e-73 280.8 279 55.9
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 8.0e-73 278.9 502 39.4
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.0e-72 278.5 453 41.9
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.8e-72 277.7 456 40.1
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 1.8e-72 277.7 511 39.3
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 4.0e-72 276.6 386 43.3
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 4.4e-71 273.1 426 40.8
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.3e-70 271.6 345 48.1
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 8.3e-70 268.9 451 38.6
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 8.3e-70 268.9 468 37.6
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 2.4e-69 267.3 480 38.1
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.1e-69 266.5 509 36.5
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 2.3e-67 260.8 315 50.2
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 3.8e-67 260.0 265 55.5
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 1.5e-66 258.1 468 39.3
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.5e-66 257.3 470 37.0
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 2.5e-66 257.3 468 38.9
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 4.2e-66 256.5 470 36.6
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 7.2e-66 255.8 464 37.3
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 9.5e-66 255.4 470 36.2
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 9.5e-66 255.4 470 36.2
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.1e-65 254.2 443 37.9
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 4.7e-65 253.1 472 36.7
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.0e-63 247.7 512 35.7
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.7e-62 244.6 378 40.2
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 4.9e-62 243.0 383 40.7
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 8.3e-62 242.3 476 37.8
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 9.2e-61 238.8 388 40.2
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 2.7e-60 237.3 431 38.7
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 5.9e-60 236.1 491 36.5
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 3.8e-59 233.4 286 50.0
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 5.6e-58 229.6 254 52.4
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.1e-57 227.6 375 43.2
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.4e-53 214.9 317 42.3
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 4.6e-52 209.9 290 45.5
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 9.8e-47 192.2 263 41.8
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.1e-45 188.7 223 48.9
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.7e-44 184.1 313 39.9
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 3.5e-44 183.7 468 33.1
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.6e-44 183.3 260 42.7
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 8.9e-40 169.1 481 30.6
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 7.5e-39 166.0 542 28.6
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 8.3e-38 162.5 265 40.0
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.4e-37 161.8 481 29.7
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 2.4e-37 161.0 383 33.4
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 3.9e-35 153.7 273 38.8
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 4.0e-32 143.7 195 42.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.7e-30 138.3 134 55.2
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 1.5e-26 125.2 122 55.7
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 3.6e-25 120.6 247 37.2
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.1e-24 119.0 151 44.4
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.3e-17 95.5 259 30.9
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 1.8e-16 91.7 88 50.0
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 2.6e-15 87.8 171 40.4
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 7.6e-15 86.3 149 36.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 9.3e-13 79.3 168 35.7
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 2.1e-12 78.2 145 40.0
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.3e-11 75.5 234 28.2
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 3.0e-11 74.3 229 30.1
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 3.9e-11 73.9 154 37.0
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 6.7e-11 73.2 99 41.4
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 8.7e-11 72.8 44 75.0
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 7.4e-10 69.7 155 36.8
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 2.8e-09 67.8 176 30.7
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 3.1e-08 64.3 70 45.7
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 5.3e-08 63.5 78 47.4
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 1.3e-06 58.9 229 28.8
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 3.8e-06 57.4 154 33.8
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 4.9e-06 57.0 143 26.6
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 6.4e-06 56.6 122 33.6


User provided reference genes

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