Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 1.3e-191 672.9 339 100.0
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.3e-191 672.9 339 100.0
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 2.8e-191 671.8 339 99.7
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.6e-186 656.0 339 97.1
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.3e-183 646.4 339 95.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.3e-182 641.0 339 94.4
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.0e-181 639.0 339 94.7
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.3e-180 636.3 339 94.1
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.8e-180 634.8 339 92.9
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 8.5e-180 633.6 339 94.4
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.6e-178 629.4 339 93.2
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.8e-177 625.9 339 91.2
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 3.9e-177 624.8 339 92.0
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.3e-176 621.7 340 92.1
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 5.7e-176 620.9 337 90.5
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 7.4e-176 620.5 339 91.7
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 7.4e-176 620.5 339 92.0
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 92.0
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.2e-175 619.0 339 91.7
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.8e-175 618.6 340 91.5
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.8e-175 618.6 339 90.6
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.7e-175 618.2 339 90.6
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 6.3e-175 617.5 339 90.6
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 6.3e-175 617.5 335 91.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.8e-174 615.9 339 90.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.8e-174 615.9 331 91.5
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.4e-174 615.5 331 93.4
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.4e-174 615.5 339 91.2
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 3.1e-174 615.1 339 90.3
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.1e-174 615.1 343 89.8
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.1e-174 614.8 340 90.3
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 5.3e-174 614.4 339 90.6
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 5.3e-174 614.4 337 90.2
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 6.9e-174 614.0 339 90.0
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 6.9e-174 614.0 339 90.0
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.5e-173 612.8 339 90.6
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.5e-173 612.8 339 90.9
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 90.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.6e-173 612.1 339 89.7
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 3.4e-173 611.7 339 89.1
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 3.4e-173 611.7 339 89.7
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 4.5e-173 611.3 339 90.0
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.3e-172 609.8 333 91.0
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.2e-172 609.0 339 89.4
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.9e-172 608.6 339 88.5
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 2.9e-172 608.6 339 89.4
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 3.8e-172 608.2 333 91.3
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.5e-172 607.4 339 88.2
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 88.2
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 88.8
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 88.8
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.4e-171 606.3 340 90.3
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.4e-171 606.3 340 90.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.9e-171 605.9 339 88.8
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.9e-171 605.9 339 88.8
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.9e-171 605.9 339 88.8
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.9e-171 605.9 340 90.3
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.5e-171 605.5 340 89.4
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.5e-171 605.5 339 89.4
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.5e-171 605.5 339 91.4
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 4.2e-171 604.7 339 88.8
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 7.2e-171 604.0 340 89.4
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 9.4e-171 603.6 338 89.3
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.4e-171 603.6 340 89.7
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.2e-170 603.2 339 89.4
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.2e-170 603.2 333 90.1
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.6e-170 602.8 340 89.1
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 2.7e-170 602.1 338 89.1
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 3.6e-170 601.7 309 97.1
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.1e-170 600.9 341 89.4
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 7.9e-170 600.5 333 88.9
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 7.9e-170 600.5 339 88.2
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 3.0e-169 598.6 341 88.3
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 5.1e-169 597.8 335 89.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 5.1e-169 597.8 333 89.5
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.1e-168 596.7 339 86.4
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.5e-168 596.3 339 86.7
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.6e-168 595.5 326 91.7
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 4.4e-168 594.7 342 87.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.3e-167 593.2 381 81.1
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 6.3e-167 590.9 338 87.6
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.4e-166 589.0 353 84.7
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.2e-165 586.6 339 84.1
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 3.4e-165 585.1 340 87.1
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.3e-164 583.2 318 91.2
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.3e-164 583.2 333 85.6
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 5.0e-164 581.3 333 85.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 5.0e-164 581.3 333 85.0
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 8.5e-164 580.5 337 84.0
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 8.5e-164 580.5 333 85.0
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-163 580.1 333 84.4
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.1e-163 580.1 333 84.7
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.1e-163 580.1 333 85.0
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.1e-163 580.1 335 84.5
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.5e-163 578.9 333 85.0
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 2.5e-163 578.9 338 83.4
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.5e-163 578.9 333 84.7
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.5e-163 578.9 309 92.2
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 3.2e-163 578.6 333 84.4
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.2e-163 578.6 333 85.6
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 5.5e-163 577.8 333 84.7
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 5.5e-163 577.8 333 84.4
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.2e-162 576.6 321 90.7
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.6e-162 576.2 333 84.1
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.6e-162 575.1 333 84.7
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.7e-162 574.7 314 91.1
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.0e-161 573.5 339 86.1
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.8e-161 572.8 333 83.8
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.8e-161 572.8 333 83.8
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.3e-161 572.4 331 86.7
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 6.7e-161 570.9 324 85.5
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 8.8e-161 570.5 339 82.3
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.1e-160 570.1 348 81.0
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.1e-160 570.1 333 83.8
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 7.0e-158 560.8 341 80.4
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.6e-157 559.7 320 86.6
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.5e-155 553.1 377 78.5
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 4.2e-155 551.6 343 79.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 4.7e-154 548.1 314 84.7
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.4e-153 546.6 336 78.0
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 6.7e-153 544.3 339 82.0
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 9.7e-152 540.4 338 77.5
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.4e-150 535.8 338 77.8
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 5.3e-150 534.6 418 69.1
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 7.7e-149 530.8 335 77.3
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.9e-148 528.9 338 76.3
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 5.2e-145 518.1 359 74.1
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.6e-141 506.5 271 91.5
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 6.5e-140 501.1 339 77.9
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.2e-138 496.9 296 84.1
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.6e-138 496.5 263 94.3
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.0e-137 493.8 263 94.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.0e-137 493.8 263 94.3
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 7.0e-134 481.1 316 73.1
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 5.6e-131 471.5 339 73.7
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.0e-129 467.2 339 73.5
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.6e-122 442.2 341 67.2
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.7e-119 433.3 237 89.0
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 7.8e-117 424.5 251 81.3
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.4e-113 413.7 311 63.3
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.8e-113 413.3 251 82.1
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 4.6e-109 398.7 216 90.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 8.6e-108 394.4 245 78.0
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 5.8e-104 381.7 328 57.6
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.0e-100 370.9 341 57.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 4.7e-53 212.6 128 81.2
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 7.4e-43 178.7 164 62.2
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.3e-34 151.4 180 53.3
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 8.5e-31 138.7 79 83.5
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 5.2e-28 129.4 74 82.4
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.7e-26 123.2 73 80.8
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 6.3e-26 122.5 74 79.7
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.6e-21 106.7 110 56.4
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 4.1e-17 93.2 51 90.2
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 1.0e-12 78.6 99 47.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.0e-11 74.3 42 81.0
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 3.4e-11 73.6 98 48.0
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.9e-09 67.8 118 39.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.4e-09 67.4 60 60.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.4e-09 67.4 60 60.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 3.3e-06 57.0 125 36.0


User provided reference genes

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