Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 1.1e-110 403.3 203 100.0
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 1.1e-110 403.3 203 100.0
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 1.1e-105 386.7 202 95.0
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 5.4e-105 384.4 204 95.1
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 2.9e-95 352.1 221 83.3
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 9.2e-89 330.5 205 79.0
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 9.2e-89 330.5 198 79.8
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 3.9e-87 325.1 199 78.4
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 5.0e-87 324.7 168 97.0
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 8.6e-87 323.9 200 77.5
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.5e-86 323.2 199 77.4
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 3.3e-86 322.0 195 79.0
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 5.6e-86 321.2 203 77.8
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 9.5e-86 320.5 204 76.0
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 2.1e-85 319.3 198 77.3
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 2.8e-85 318.9 203 76.8
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 3.6e-85 318.5 197 78.2
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 6.1e-85 317.8 196 78.1
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 1.4e-84 316.6 197 75.6
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.3e-84 315.8 193 79.8
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.3e-84 315.8 198 77.3
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 3.1e-84 315.5 203 76.4
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 4.0e-84 315.1 207 76.8
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 5.2e-84 314.7 200 76.5
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 8.9e-84 313.9 203 74.4
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 8.9e-84 313.9 196 75.5
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 1.2e-83 313.5 197 74.1
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.5e-83 313.2 198 76.3
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 3.4e-83 312.0 192 78.6
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 4.4e-83 311.6 198 75.3
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 5.8e-83 311.2 200 75.5
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 5.8e-83 311.2 197 75.1
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 5.8e-83 311.2 205 74.1
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.7e-82 309.7 201 78.1
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 1.7e-82 309.7 203 75.4
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 2.9e-82 308.9 196 74.0
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 4.9e-82 308.1 198 72.7
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 6.4e-82 307.8 194 75.8
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 6.4e-82 307.8 197 74.6
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.4e-81 306.6 197 74.1
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 1.4e-81 306.6 198 74.2
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 3.2e-81 305.4 196 73.0
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 5.4e-81 304.7 201 73.1
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 5.4e-81 304.7 192 76.6
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 7.0e-81 304.3 198 74.2
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 1.2e-80 303.5 196 73.5
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 1.6e-80 303.1 214 69.2
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.6e-80 303.1 200 74.5
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 4.6e-80 301.6 196 73.0
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.0e-79 300.4 198 72.7
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 3.0e-79 298.9 198 71.2
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 8.6e-79 297.4 195 75.9
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 2.5e-78 295.8 201 70.6
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 7.3e-78 294.3 215 67.9
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 2.8e-77 292.4 196 68.9
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 2.0e-75 286.2 199 67.3
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 2.6e-75 285.8 199 67.3
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 3.4e-75 285.4 202 65.8
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 7.5e-75 284.3 200 69.5
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 9.8e-75 283.9 199 66.8
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 1.3e-74 283.5 197 69.5
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 1.7e-74 283.1 199 68.8
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 2.2e-74 282.7 199 66.8
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 2.9e-74 282.3 194 69.1
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 8.3e-74 280.8 199 67.3
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 1.9e-73 279.6 174 77.6
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 4.1e-73 278.5 227 59.9
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.2e-72 276.9 188 69.1
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.6e-72 276.6 199 64.8
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 2.1e-72 276.2 194 67.5
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 7.8e-72 274.2 170 76.5
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 1.5e-70 270.0 197 64.0
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 1.9e-70 269.6 209 62.7
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 1.9e-70 269.6 202 65.3
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 3.1e-68 262.3 193 67.9
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 7.6e-67 257.7 198 63.6
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 2.1e-64 249.6 192 64.1
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.1e-64 249.6 195 63.6
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 3.0e-63 245.7 158 70.9
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 4.3e-62 241.9 200 59.0
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 7.3e-62 241.1 199 59.8
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 1.5e-59 233.4 152 73.0
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 2.9e-58 229.2 157 69.4
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 4.2e-57 225.3 195 57.9
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 1.7e-47 193.4 131 72.5
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 5.1e-47 191.8 198 52.0
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 3.3e-46 189.1 127 70.9
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 3.3e-46 189.1 127 70.9
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.3e-45 187.2 132 69.7
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.1e-44 184.1 201 46.8
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 3.1e-44 182.6 163 59.5
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 4.5e-43 178.7 141 65.2
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.2e-40 170.6 195 43.6
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 2.7e-40 169.5 169 53.3
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 4.6e-40 168.7 189 42.3
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 1.0e-39 167.5 126 66.7
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 7.4e-38 161.4 193 40.4
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 4.0e-36 155.6 130 54.6
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 2.5e-30 136.3 127 50.4
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.6e-29 133.7 175 45.1
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 7.6e-27 124.8 65 83.1
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.0e-26 124.4 110 60.0
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 1.6e-24 117.1 85 69.4
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 6.7e-23 111.7 157 42.7
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 6.7e-23 111.7 78 65.4
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 5.7e-22 108.6 88 62.5
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 4.8e-21 105.5 70 70.0
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 2.0e-19 100.1 108 54.6
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 2.5e-17 93.2 63 63.5
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 3.2e-17 92.8 151 37.1
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 1.6e-16 90.5 160 36.9
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 2.4e-12 76.6 62 58.1
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 2.5e-09 66.6 44 65.9
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 2.5e-09 66.6 40 67.5
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 5.1e-07 58.9 85 40.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.0e-06 57.0 141 26.2
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.4e-06 55.8 172 19.8
TPR.G22507 Trifolium pratense HOM05D006956 ORTHO05D008824 9.7e-06 54.7 32 75.0


User provided reference genes

Program Settings