Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 0.0e+00 1731.8 971 100.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 0.0e+00 1562.7 1002 87.9
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 0.0e+00 1535.0 1006 86.8
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 0.0e+00 1148.3 1035 66.4
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.0e-307 1060.1 689 88.5
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.9e-297 1025.4 1061 62.1
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.7e-294 1016.1 1030 62.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.2e-107 394.0 1062 35.3
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.3e-95 355.5 1116 32.4
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 2.2e-92 344.7 1085 33.3
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 5.0e-92 343.6 1023 34.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 9.8e-88 329.3 1121 33.1
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 5.9e-85 320.1 1033 33.1
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 5.0e-84 317.0 1137 31.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 2.6e-80 304.7 1198 29.5
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.3e-79 302.4 1066 31.7
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 5.4e-78 297.0 1216 28.9
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.0e-76 292.7 1085 31.1
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.0e-76 292.7 1125 28.4
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.5e-75 288.9 1065 31.4
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.8e-74 284.6 1076 29.8
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 8.9e-73 279.6 1120 29.6
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 1.2e-72 279.3 1113 30.8
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.2e-72 279.3 1101 29.6
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.5e-72 278.9 1243 28.7
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.4e-72 277.3 1101 29.5
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.7e-71 275.4 1087 29.1
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.7e-71 275.4 1069 30.8
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.4e-70 271.6 1239 28.3
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 3.2e-70 271.2 1157 30.9
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 9.2e-70 269.6 1192 29.2
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.6e-69 268.9 1221 28.3
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.7e-69 268.1 1117 29.1
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 2.7e-69 268.1 1082 30.7
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 3.3e-67 261.2 1027 30.4
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 2.1e-66 258.5 1170 29.4
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.6e-66 257.7 1147 27.8
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 8.0e-66 256.5 1118 29.1
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 8.9e-65 253.1 1132 28.8
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 3.7e-63 247.7 1025 29.5
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.4e-62 245.7 1101 28.5
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.4e-62 245.7 1061 29.1
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.4e-62 245.7 1110 29.5
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.7e-61 241.5 1127 27.7
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.7e-60 238.8 273 57.5
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.9e-60 237.7 1065 28.5
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.1e-59 236.1 1050 29.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.2e-58 232.6 1262 27.4
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.2e-58 232.6 1320 27.5
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.7e-58 230.7 1027 30.0
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 6.2e-58 230.3 1070 28.1
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.1e-57 229.6 220 62.7
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 3.7e-55 221.1 1125 26.5
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.4e-55 220.3 997 28.9
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.4e-54 219.2 1125 29.6
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 9.2e-54 216.5 288 49.7
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 4.6e-53 214.2 621 35.3
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 4.6e-53 214.2 1045 28.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.0e-52 211.5 1157 25.6
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 5.1e-52 210.7 1036 27.7
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.6e-52 210.3 1036 27.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.6e-52 209.9 1035 27.1
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 5.6e-51 207.2 1042 25.8
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.3e-51 206.8 279 52.3
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 8.1e-50 203.4 1026 26.6
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.9e-49 199.9 284 50.0
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 3.4e-48 198.0 605 32.6
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 7.6e-48 196.8 1038 26.5
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.3e-47 196.1 1015 27.0
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.4e-46 191.8 269 49.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.2e-46 191.0 1011 26.4
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 2.7e-45 188.3 971 27.2
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.6e-45 187.6 487 35.7
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.3e-44 185.3 727 30.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.3e-44 185.3 559 33.5
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.5e-43 182.6 1085 27.7
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 8.1e-42 176.8 950 26.8
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.0e-41 174.5 1033 25.4
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.6e-40 171.8 1040 27.5
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.6e-40 171.8 410 38.0
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 5.8e-40 170.6 267 46.4
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.2e-39 168.7 1086 25.9
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 2.9e-39 168.3 977 25.9
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 1.7e-36 159.1 1032 25.4
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.7e-36 159.1 266 44.0
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 5.1e-36 157.5 670 30.7
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 8.1e-34 150.2 170 55.9
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.2e-32 146.4 257 43.6
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-32 146.0 978 26.4
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 9.9e-32 143.3 866 25.6
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.9e-32 143.3 1020 26.6
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 7.9e-29 133.7 1213 23.3
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.0e-28 133.3 240 42.5
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.9e-27 129.0 289 35.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.9e-27 129.0 988 25.2
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.1e-25 123.2 259 40.2
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.4e-25 122.9 980 26.7
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-25 122.5 136 51.5
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.0e-23 116.7 972 24.5
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 2.5e-22 112.1 156 42.9
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.2e-22 111.7 154 49.4
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 4.6e-21 107.8 127 53.5
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 6.0e-21 107.5 152 47.4
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.3e-20 106.3 134 46.3
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.1e-19 103.2 224 41.5
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.9e-19 102.4 437 26.5
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 5.7e-19 100.9 985 24.5
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 8.2e-18 97.1 116 50.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.4e-17 96.3 154 39.0
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 2.4e-17 95.5 154 38.3
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 4.1e-17 94.7 135 40.7
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 9.0e-17 93.6 146 39.0
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.2e-16 93.2 1061 24.6
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 2.0e-16 92.4 991 23.3
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.6e-16 92.0 991 22.3
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 5.8e-16 90.9 977 22.0
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.7e-15 89.4 79 55.7
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 2.9e-15 88.6 999 24.4
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 3.8e-15 88.2 795 23.4
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.0e-15 87.8 1014 23.3
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 4.2e-14 84.7 68 54.4
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 3.0e-12 78.6 102 43.1
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 3.0e-12 78.6 144 36.1
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.9e-12 78.2 991 22.5
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 6.7e-12 77.4 102 44.1
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 6.7e-12 77.4 150 40.7
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.1e-11 76.6 127 40.2
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 5.7e-11 74.3 291 28.2
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 7.4e-11 73.9 127 38.6
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 7.4e-11 73.9 127 38.6
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.3e-10 73.2 152 39.5
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 3.7e-10 71.6 512 25.8
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.1e-09 70.1 66 51.5
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 2.4e-09 68.9 992 22.2
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 5.3e-09 67.8 515 25.8
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 3.4e-08 65.1 1001 22.9
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 3.4e-08 65.1 59 61.0
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 4.5e-08 64.7 82 36.6
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 5.9e-08 64.3 127 33.1
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.0e-07 63.5 1005 21.5
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 2.2e-07 62.4 485 26.2
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.5e-06 58.9 336 25.3
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 5.5e-06 57.8 31 67.7


User provided reference genes

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