Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 7.3e-226 786.9 416 100.0
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 6.0e-220 767.3 416 97.1
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 9.7e-186 653.7 369 90.8
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 4.5e-167 591.7 367 83.7
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 3.2e-165 585.5 416 75.2
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 3.2e-157 558.9 416 70.9
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 3.4e-154 548.9 417 72.4
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 9.3e-112 407.9 405 54.1
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 2.2e-105 386.7 408 52.2
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 3.2e-104 382.9 408 51.2
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 6.7e-102 375.2 403 49.9
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 1.3e-100 370.9 404 49.0
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.3e-100 370.9 409 49.9
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 2.1e-100 370.2 402 50.5
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.1e-99 366.3 408 48.8
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 3.1e-99 366.3 440 48.0
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 9.0e-99 364.8 403 47.9
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 7.6e-98 361.7 402 50.0
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.3e-97 360.9 402 47.5
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 3.8e-97 359.4 405 48.6
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 7.1e-96 355.1 377 50.4
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.8e-94 350.5 440 47.0
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 3.0e-94 349.7 403 47.4
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.1e-94 349.0 402 47.3
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 5.1e-94 349.0 402 46.8
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 1.3e-92 344.4 403 47.6
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 2.8e-92 343.2 394 48.2
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 4.5e-90 335.9 404 47.0
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.7e-89 334.0 433 45.7
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 2.2e-89 333.6 433 45.7
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 9.3e-88 328.2 362 49.2
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 2.7e-87 326.6 534 38.8
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 7.9e-87 325.1 409 44.5
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 2.3e-86 323.6 404 43.8
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 2.3e-86 323.6 551 37.9
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.9e-85 320.5 406 46.3
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.3e-84 317.8 403 43.4
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.6e-84 317.4 402 44.5
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 2.1e-84 317.0 406 46.1
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 1.5e-82 310.8 403 43.4
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.6e-82 310.1 405 43.7
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 5.9e-82 308.9 404 43.8
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 5.9e-82 308.9 399 42.4
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 5.9e-82 308.9 381 44.4
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 1.0e-81 308.1 403 42.9
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 3.8e-81 306.2 404 43.6
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 3.8e-81 306.2 403 41.9
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 1.1e-80 304.7 402 42.0
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 7.9e-79 298.5 404 41.6
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.1e-77 294.7 403 41.9
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.1e-77 294.7 259 65.3
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 1.9e-77 293.9 413 41.4
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 3.3e-77 293.1 410 41.2
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 5.7e-77 292.4 408 41.2
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 3.7e-76 289.7 339 46.0
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 4.8e-76 289.3 404 42.3
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 3.4e-74 283.1 420 40.5
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 1.3e-73 281.2 403 40.2
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 1.3e-73 281.2 403 40.2
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 2.2e-73 280.4 407 41.8
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 3.8e-73 279.6 411 40.9
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 2.5e-72 276.9 251 56.6
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 3.2e-72 276.6 406 40.4
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 4.2e-72 276.2 402 40.0
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 3.6e-71 273.1 413 39.5
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 7.9e-71 271.9 251 56.2
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 2.3e-70 270.4 511 34.8
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.5e-69 267.7 375 41.6
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 3.3e-69 266.5 382 39.3
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 9.1e-67 258.5 405 39.3
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 1.5e-66 257.7 379 40.6
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.9e-65 253.4 380 39.2
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 5.5e-64 249.2 402 37.8
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 1.2e-63 248.1 417 36.9
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 1.6e-63 247.7 537 33.0
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 2.1e-63 247.3 403 38.0
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 2.7e-63 246.9 353 41.4
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 4.7e-63 246.1 403 37.5
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 6.1e-63 245.7 369 38.5
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 3.9e-62 243.0 353 40.8
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.5e-61 241.1 420 38.6
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 3.3e-61 240.0 370 38.4
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 7.4e-61 238.8 400 36.8
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.7e-60 237.7 374 38.8
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 7.0e-59 232.3 391 35.5
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 3.3e-53 213.4 402 32.8
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 4.8e-52 209.5 373 35.1
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 3.1e-51 206.8 360 36.9
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.1e-51 206.5 269 43.9
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 6.5e-49 199.1 387 34.6
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 2.7e-47 193.7 169 58.6
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 6.8e-46 189.1 244 43.9
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 2.0e-45 187.6 386 32.6
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 7.5e-45 185.7 385 33.5
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 2.2e-44 184.1 298 36.9
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 1.1e-43 181.8 199 46.7
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 1.8e-43 181.0 344 33.1
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 1.6e-42 177.9 134 64.9
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 2.3e-41 174.1 301 37.5
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 3.2e-40 170.2 302 36.4
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.2e-40 170.2 302 36.4
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 4.7e-39 166.4 299 35.8
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 1.8e-38 164.5 199 44.2
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 1.7e-36 157.9 137 59.9
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 6.3e-36 156.0 253 35.6
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 9.2e-35 152.1 217 41.5
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 4.0e-30 136.7 255 36.9
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.5e-29 134.8 263 36.9
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.7e-26 124.0 261 33.3
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.8e-22 111.3 417 26.1
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 1.4e-19 101.7 126 47.6
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 1.1e-14 85.5 152 32.9
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 1.8e-14 84.7 252 27.0
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 4.0e-14 83.6 68 57.4
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 4.0e-14 83.6 68 57.4
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 6.8e-14 82.8 145 35.9
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.2e-13 82.0 83 50.6
Pp3c12_25780 Physcomitrium patens HOM05D058747 ORTHO05D007778 1.2e-13 82.0 252 23.4
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 3.4e-13 80.5 114 38.6
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.9e-11 74.7 111 36.0
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 3.5e-10 70.5 261 23.0
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.3e-08 63.9 118 33.1
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 4.0e-06 57.0 63 47.6


User provided reference genes

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