Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.7e-189 665.2 355 100.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 5.7e-187 657.5 355 99.2
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.6e-165 586.3 352 89.8
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.7e-162 575.1 352 87.2
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.6e-160 569.7 314 96.8
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 3.2e-153 545.4 428 72.4
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.9e-142 509.6 316 88.3
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.3e-140 501.5 314 86.9
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 4.9e-138 495.0 363 73.8
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.5e-131 473.4 363 71.6
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 2.9e-130 469.2 374 70.1
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.9e-129 466.5 339 72.3
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.8e-127 459.9 357 68.9
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 3.9e-127 458.8 354 70.1
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 4.3e-126 455.3 339 70.5
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.6e-125 453.4 371 67.7
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 2.1e-125 453.0 381 67.2
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.8e-124 449.9 337 70.6
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.5e-123 446.8 337 69.1
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.7e-122 443.4 341 68.9
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 6.4e-122 441.4 341 68.3
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.2e-120 437.2 354 65.3
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.0e-119 434.1 338 67.2
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 5.1e-119 431.8 346 67.3
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 6.7e-119 431.4 342 66.4
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 8.7e-119 431.0 353 64.9
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 8.7e-119 431.0 354 65.0
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-117 426.8 353 64.9
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.8e-116 423.3 354 64.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.8e-116 423.3 354 65.3
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.1e-116 422.5 336 65.5
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.1e-116 422.5 346 65.0
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 4.0e-116 422.2 399 60.4
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.9e-116 421.4 341 65.1
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 6.9e-116 421.4 342 65.8
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 9.0e-116 421.0 348 64.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.6e-115 419.5 356 65.2
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 4.5e-115 418.7 347 64.0
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 7.6e-115 417.9 348 64.7
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.3e-114 417.2 348 63.5
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 2.2e-114 416.4 359 61.8
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 4.9e-114 415.2 358 63.1
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 8.4e-114 414.5 356 62.4
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.1e-113 414.1 348 63.5
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.4e-113 413.7 353 63.7
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.2e-113 412.1 354 62.4
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.0e-111 407.5 352 62.2
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 2.3e-111 406.4 349 64.2
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 3.3e-110 402.5 356 61.5
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 9.7e-110 401.0 357 60.8
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-109 399.8 367 60.8
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 2.2e-109 399.8 337 62.3
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 3.7e-109 399.1 369 59.6
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 3.7e-109 399.1 353 61.8
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 8.2e-109 397.9 473 51.6
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-108 397.5 353 61.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 6.9e-108 394.8 279 74.9
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 6.9e-108 394.8 357 61.1
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 6.9e-108 394.8 339 61.9
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 6.9e-108 394.8 345 60.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 7.7e-107 391.3 340 60.9
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.7e-106 390.2 357 60.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 3.8e-106 389.0 339 60.8
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.5e-105 386.3 342 59.4
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 5.5e-105 385.2 370 57.0
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 7.2e-105 384.8 374 57.0
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 7.9e-104 381.3 355 58.6
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.3e-103 379.8 353 59.2
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 2.2e-101 373.2 307 64.8
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.7e-101 372.5 343 58.0
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 8.2e-101 371.3 339 57.2
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 8.2e-101 371.3 296 66.6
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.1e-100 370.9 339 58.7
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-100 370.9 445 49.4
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.4e-100 370.5 339 57.2
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 5.3e-100 368.6 345 55.9
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 5.3e-100 368.6 354 55.6
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 6.9e-100 368.2 357 56.3
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.2e-99 367.5 339 57.5
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.4e-99 365.9 312 62.2
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.4e-99 365.9 349 55.9
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.4e-99 365.9 355 56.1
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.4e-99 365.9 350 61.1
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 7.7e-99 364.8 355 56.1
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 2.2e-98 363.2 337 57.9
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 2.9e-98 362.8 345 55.9
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.4e-97 360.5 335 57.3
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 4.2e-97 359.0 354 56.2
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 7.2e-97 358.2 354 55.9
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.2e-96 357.5 354 55.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 4.7e-96 355.5 391 51.9
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 3.3e-94 349.4 360 53.3
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.4e-94 348.2 303 61.7
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.3e-93 347.4 297 62.6
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.2e-93 346.7 303 62.0
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.7e-93 345.9 305 62.0
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.4e-92 343.2 336 58.3
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.5e-91 340.5 368 54.9
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.5e-91 340.5 329 59.0
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 2.6e-91 339.7 298 62.8
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.5e-91 339.3 338 57.7
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 8.5e-90 334.7 561 41.4
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.5e-89 334.0 267 70.0
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 9.4e-89 331.3 351 54.4
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 4.7e-88 328.9 271 64.2
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 8.0e-88 328.2 339 53.1
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 1.0e-87 327.8 321 55.5
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.8e-87 327.0 411 49.1
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 3.0e-87 326.2 298 57.4
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 9.7e-86 321.2 321 62.0
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.7e-85 320.5 317 57.4
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 6.3e-85 318.5 317 57.4
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 6.3e-85 318.5 349 53.9
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.1e-84 317.8 348 51.1
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 7.2e-81 305.1 317 54.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.8e-79 298.5 225 68.0
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.6e-78 296.6 306 55.9
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.7e-77 292.7 243 67.9
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.1e-76 289.3 339 49.6
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 5.2e-71 272.3 347 47.6
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.8e-71 271.9 342 47.7
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 5.0e-66 255.8 329 47.7
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.4e-60 237.7 128 93.0
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 3.5e-59 233.0 249 52.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-57 228.0 164 70.1
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 4.3e-57 226.1 157 71.3
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.7e-53 214.2 197 62.9
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 1.3e-50 204.5 201 56.7
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.7e-50 204.1 165 67.9
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 4.3e-49 199.5 325 38.5
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 7.3e-49 198.7 378 35.7
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.7e-48 196.1 207 54.1
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 2.3e-47 193.7 220 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 6.8e-47 192.2 320 38.8
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 9.2e-44 181.8 165 60.0
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 3.9e-42 176.4 314 37.3
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.8e-40 170.2 137 64.2
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 3.6e-40 169.9 113 74.3
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 3.6e-40 169.9 113 74.3
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 9.2e-36 155.2 234 42.7
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.9e-33 147.5 101 73.3
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.9e-28 131.0 130 56.9
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 2.1e-27 127.5 103 65.0
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-25 119.8 168 45.8
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 8.1e-24 115.5 122 51.6
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 2.4e-23 114.0 155 46.5
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 1.7e-21 107.8 237 35.4
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.6e-19 101.3 284 33.5
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.3e-18 97.4 113 48.7
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.9e-12 77.8 87 50.6
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.3e-10 71.6 234 29.9
Cfa023794 Carpinus fangiana HOM05D004482 ORTHO05D121655 1.3e-08 65.1 145 34.5
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 2.4e-07 60.8 62 59.7
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 5.3e-07 59.7 62 53.2


User provided reference genes

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