Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.6e-86 322.8 165 100.0
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.5e-84 316.2 165 99.4
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 5.4e-79 297.7 167 95.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 2.9e-69 265.4 168 83.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 6.8e-66 254.2 169 79.9
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 6.2e-51 204.5 162 73.5
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.9e-39 166.4 99 81.8
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.4e-34 150.2 166 58.4
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.4e-31 139.4 171 55.6
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-30 137.1 165 50.9
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-30 137.1 164 50.6
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-30 137.1 169 54.4
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.6e-30 136.7 165 53.9
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.7e-30 136.0 176 55.1
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.6e-30 135.2 176 51.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 6.0e-30 134.8 167 49.1
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 7.8e-30 134.4 165 50.3
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-29 133.7 176 51.1
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.3e-29 133.7 165 49.7
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.7e-29 133.3 171 52.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.3e-29 132.9 173 48.6
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-29 132.5 172 49.4
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-29 132.1 176 51.1
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-29 132.1 176 51.1
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 3.9e-29 132.1 176 51.1
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.9e-29 132.1 174 53.4
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 6.6e-29 131.3 173 49.7
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.1e-28 130.6 173 49.7
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.5e-28 130.2 174 50.6
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.5e-28 129.4 176 50.6
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.3e-28 129.0 170 50.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.3e-28 128.6 173 52.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.6e-28 128.3 171 52.0
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 5.6e-28 128.3 180 50.0
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 9.6e-28 127.5 173 48.6
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.6e-27 126.7 179 49.7
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.6e-27 126.7 168 51.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.6e-27 126.7 172 50.0
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.1e-27 126.3 174 49.4
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 2.8e-27 125.9 170 50.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 4.8e-27 125.2 174 49.4
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.1e-27 124.4 175 49.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 8.1e-27 124.4 174 47.7
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 8.1e-27 124.4 154 51.9
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.1e-27 124.4 173 50.3
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-26 124.0 172 48.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-26 124.0 172 48.8
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 3.1e-26 122.5 163 47.2
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 6.9e-26 121.3 174 48.3
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 6.9e-26 121.3 166 48.8
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 9.0e-26 120.9 182 46.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.5e-25 120.2 171 47.4
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.4e-25 119.0 173 50.9
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.5e-25 118.6 175 46.3
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.5e-25 118.6 170 47.6
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 5.8e-25 118.2 168 47.6
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 5.8e-25 118.2 171 46.8
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 7.6e-25 117.9 158 48.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 9.9e-25 117.5 172 47.1
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 9.9e-25 117.5 171 49.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.3e-24 117.1 171 46.8
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.7e-24 116.7 180 47.2
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.2e-24 116.3 171 45.6
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.2e-24 116.3 169 46.2
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 2.2e-24 116.3 171 48.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.9e-24 115.9 175 46.9
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 3.8e-24 115.5 170 45.3
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.4e-24 114.4 178 46.6
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 8.4e-24 114.4 169 49.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 8.4e-24 114.4 168 47.6
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.1e-23 114.0 168 45.8
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.1e-23 114.0 180 45.0
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.9e-23 113.2 75 77.3
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.9e-23 113.2 175 44.6
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.9e-23 113.2 183 42.1
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.9e-23 113.2 182 41.8
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 5.4e-23 111.7 165 50.9
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 7.1e-23 111.3 162 46.9
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 7.1e-23 111.3 170 46.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 9.3e-23 110.9 185 42.7
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.6e-22 110.2 168 45.2
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.7e-22 109.4 168 48.2
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.7e-22 109.4 166 48.2
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.7e-22 109.4 178 44.4
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 4.6e-22 108.6 189 39.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.3e-21 107.1 173 45.1
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.8e-21 106.7 176 42.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.3e-21 106.3 184 41.8
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.0e-21 105.9 175 43.4
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.1e-21 105.1 161 45.3
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.1e-21 105.1 175 40.0
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.1e-21 105.1 161 45.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 6.7e-21 104.8 90 68.9
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.7e-21 104.4 175 40.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 8.7e-21 104.4 174 44.8
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-20 104.0 166 45.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.5e-20 103.6 161 44.7
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.5e-20 103.6 178 43.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-20 103.2 166 45.8
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.9e-20 103.2 178 39.9
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 4.3e-20 102.1 165 45.5
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 4.3e-20 102.1 162 40.7
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.4e-20 101.3 89 64.0
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.4e-20 101.3 166 47.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-19 100.5 179 39.1
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.6e-19 100.1 163 43.6
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.1e-19 99.8 163 46.6
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 3.6e-19 99.0 186 35.5
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 4.8e-19 98.6 196 33.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 8.1e-19 97.8 172 44.2
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.4e-18 97.1 180 41.1
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 6.9e-18 94.7 177 41.8
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.0e-17 93.2 180 40.0
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 3.4e-17 92.4 183 40.4
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 7.6e-17 91.3 106 53.8
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-16 90.5 179 35.8
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.7e-16 90.1 186 39.8
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.7e-16 90.1 180 41.1
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.2e-16 89.7 181 40.9
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 2.2e-16 89.7 183 40.4
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.2e-16 89.7 178 41.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.9e-16 89.4 146 40.4
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.4e-15 87.0 215 34.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.4e-15 86.3 183 37.7
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.4e-15 86.3 180 35.6
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 4.2e-15 85.5 190 39.5
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 4.2e-15 85.5 86 54.7
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.5e-15 85.1 154 37.0
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.3e-15 84.3 166 36.7
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 9.3e-15 84.3 192 36.5
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.2e-14 84.0 159 36.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.6e-14 83.6 182 36.8
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.1e-14 83.2 169 37.3
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 7.9e-14 81.3 164 37.2
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 7.9e-14 81.3 154 36.4
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.0e-13 80.9 165 38.8
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.8e-13 80.1 161 37.3
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.1e-13 78.6 168 38.7
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 6.7e-13 78.2 153 38.6
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-12 77.4 167 37.1
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.1e-12 77.4 167 37.1
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.1e-12 77.4 77 49.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.1e-12 77.4 188 34.0
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.9e-12 76.6 176 33.5
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.9e-12 76.6 191 32.5
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 3.3e-12 75.9 175 35.4
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 9.6e-12 74.3 163 33.7
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.3e-11 73.9 58 63.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-11 73.6 167 35.9
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.7e-11 72.4 75 53.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.7e-11 72.4 161 36.0
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-11 72.4 161 36.0
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.7e-11 72.4 161 36.0
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.7e-11 72.4 150 34.7
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 8.1e-11 71.2 167 35.3
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.1e-10 69.3 156 36.5
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 6.9e-10 68.2 162 34.0
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 6.9e-10 68.2 162 34.0
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.5e-09 67.0 165 32.1
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.7e-08 63.5 165 32.7
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.2e-08 63.2 63 52.4
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.9e-08 62.8 171 31.0
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 8.4e-08 61.2 86 44.2
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 8.4e-08 61.2 165 30.9
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 8.4e-08 61.2 172 33.7
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.1e-07 60.8 58 55.2
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.4e-07 60.5 43 69.8
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 2.5e-07 59.7 149 30.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.2e-07 59.3 72 48.6
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.2e-07 58.9 60 53.3
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.2e-06 57.4 104 35.6
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-06 57.0 167 32.9
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 4.6e-06 55.5 131 30.5


User provided reference genes

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