Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 4.5e-40 167.5 89 100.0
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 1.1e-38 162.9 89 96.6
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.0e-36 156.4 89 92.1
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 1.5e-22 109.4 89 69.7
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.9e-22 109.0 90 67.8
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 2.5e-22 108.6 89 66.3
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.3e-18 96.3 88 58.0
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 7.0e-17 90.5 74 63.5
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 1.3e-15 86.3 90 54.4
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.3e-15 85.5 88 54.5
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.0e-15 84.3 88 56.8
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.0e-15 84.3 88 55.7
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 8.6e-15 83.6 88 54.5
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 1.5e-14 82.8 89 59.6
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 1.5e-14 82.8 89 56.2
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.6e-13 79.3 88 53.4
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 2.1e-13 79.0 89 50.6
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 2.1e-13 79.0 92 55.4
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 2.1e-13 79.0 67 65.7
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.8e-13 78.6 81 53.1
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 6.1e-13 77.4 90 53.3
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.0e-12 76.6 88 52.3
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.4e-12 76.3 92 53.3
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 2.3e-12 75.5 90 50.0
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.0e-12 75.1 81 53.1
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 3.0e-12 75.1 90 53.3
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.0e-12 74.7 88 51.1
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 6.8e-12 73.9 90 50.0
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.5e-11 72.8 80 51.2
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 4.4e-11 71.2 92 47.8
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 4.4e-11 71.2 87 51.7
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 7.5e-11 70.5 78 56.4
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 7.5e-11 70.5 90 47.8
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 9.8e-11 70.1 90 46.7
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 9.8e-11 70.1 87 51.7
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 1.7e-10 69.3 87 51.7
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 2.8e-10 68.6 92 48.9
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 2.8e-10 68.6 93 50.5
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 4.9e-10 67.8 87 52.9
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 4.9e-10 67.8 87 52.9
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 4.9e-10 67.8 87 52.9
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 4.9e-10 67.8 93 50.5
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 6.3e-10 67.4 98 52.0
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 8.3e-10 67.0 105 49.5
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.1e-09 66.6 90 48.9
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 1.4e-09 66.2 73 52.1
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.4e-09 66.2 81 49.4
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.8e-09 65.9 81 49.4
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 3.1e-09 65.1 74 48.6
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 3.1e-09 65.1 86 48.8
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 3.1e-09 65.1 93 47.3
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 4.1e-09 64.7 83 51.8
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 9.2e-09 63.5 83 50.6
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 9.2e-09 63.5 89 46.1
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.6e-08 62.8 83 51.8
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.7e-08 62.0 83 50.6
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 3.5e-08 61.6 73 50.7
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 4.5e-08 61.2 90 45.6
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 4.5e-08 61.2 90 45.6
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 5.9e-08 60.8 89 48.3
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 7.8e-08 60.5 75 50.7
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 1.3e-07 59.7 88 47.7
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.7e-07 59.3 75 49.3
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 3.9e-07 58.2 67 55.2
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 3.9e-07 58.2 80 43.8
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 3.9e-07 58.2 80 43.8
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 6.6e-07 57.4 78 47.4
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 8.6e-07 57.0 80 43.8
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 8.6e-07 57.0 86 44.2
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.1e-06 56.6 86 44.2
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 1.5e-06 56.2 98 43.9
Duzib192G0134 Durio zibethinus HOM05D008630 ORTHO05D010727 1.5e-06 56.2 82 46.3
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 1.5e-06 56.2 80 45.0
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 1.5e-06 56.2 80 45.0
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 1.5e-06 56.2 65 52.3
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 2.5e-06 55.5 83 45.8
PGSC0003DMG400008623 Solanum tuberosum HOM05D005842 ORTHO05D007077 2.5e-06 55.5 51 56.9
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 4.3e-06 54.7 80 43.8
HanXRQChr14g0434231 Helianthus annuus HOM05D005842 ORTHO05D007077 7.3e-06 53.9 89 40.4


User provided reference genes

Program Settings