Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.9e-159 565.8 296 100.0
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 9.7e-156 553.5 296 97.3
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 6.5e-144 514.2 300 90.7
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.3e-75 287.3 293 61.4
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.2e-73 280.8 288 61.8
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.8e-72 276.9 299 59.5
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.6e-39 166.8 281 43.8
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.6e-39 166.8 281 43.8
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 7.7e-36 155.2 261 44.8
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 8.5e-35 151.8 231 43.3
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.9e-34 150.6 302 39.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.2e-34 149.4 199 47.2
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 7.2e-34 148.7 248 43.1
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 7.2e-34 148.7 300 41.3
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 1.6e-33 147.5 303 38.0
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 2.1e-33 147.1 292 38.4
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 4.7e-33 146.0 187 47.6
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.3e-30 137.9 249 37.8
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.2e-30 137.1 258 39.5
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 2.2e-30 137.1 288 38.5
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.8e-29 134.0 253 39.1
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 9.1e-29 131.7 201 43.8
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.2e-28 131.3 255 36.5
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.0e-28 130.6 293 39.6
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 7.7e-28 128.6 286 35.0
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.0e-27 128.3 288 35.1
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.0e-27 128.3 279 35.5
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.7e-27 127.5 279 36.6
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 2.2e-27 127.1 293 34.5
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.2e-27 127.1 262 38.5
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.5e-26 124.4 176 44.9
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.5e-26 124.4 286 37.1
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.9e-26 124.0 279 35.1
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 4.2e-26 122.9 261 40.6
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.2e-26 122.9 289 37.0
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 4.2e-26 122.9 287 36.2
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 5.5e-26 122.5 286 36.7
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 7.2e-26 122.1 285 36.8
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 9.4e-26 121.7 287 35.5
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 9.4e-26 121.7 293 35.5
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 1.2e-25 121.3 258 38.0
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.2e-25 121.3 190 44.2
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 1.2e-25 121.3 307 34.2
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.1e-25 120.6 289 36.0
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 4.7e-25 119.4 201 41.8
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 6.1e-25 119.0 258 37.2
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.3e-24 117.1 262 35.1
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 3.0e-24 116.7 272 37.5
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 3.0e-24 116.7 247 37.2
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 4.0e-24 116.3 293 35.2
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 4.0e-24 116.3 210 39.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.5e-23 114.4 285 35.1
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 5.7e-23 112.5 237 35.4
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 1.3e-22 111.3 177 42.9
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 2.8e-22 110.2 292 35.3
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 8.3e-22 108.6 200 38.5
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.1e-21 108.2 311 33.4
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.4e-21 107.8 197 38.1
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.1e-21 106.7 185 40.0
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 5.4e-21 105.9 153 48.4
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 5.4e-21 105.9 188 42.0
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 9.1e-21 105.1 155 45.8
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 9.1e-21 105.1 192 38.5
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.7e-20 103.6 184 37.0
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.7e-20 103.6 184 37.0
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.5e-20 103.2 153 47.7
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 5.9e-20 102.4 185 38.9
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.3e-19 101.3 300 32.0
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 1.3e-19 101.3 209 37.8
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 3.8e-19 99.8 208 36.5
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 5.0e-19 99.4 192 37.5
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.5e-18 97.8 191 38.7
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 3.2e-18 96.7 277 31.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.5e-18 95.9 303 31.0
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 7.2e-18 95.5 278 34.5
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 1.6e-17 94.4 181 38.1
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.6e-17 94.4 268 31.3
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.6e-17 94.4 252 33.3
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 2.1e-17 94.0 182 35.7
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 2.8e-17 93.6 191 37.7
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.7e-17 92.8 205 37.1
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 6.1e-17 92.4 182 37.4
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.4e-16 91.3 221 32.6
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.4e-16 91.3 177 35.6
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 6.8e-16 89.0 260 32.3
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 1.5e-15 87.8 234 33.3
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.5e-15 87.8 294 32.0
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 3.4e-15 86.7 293 30.4
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 9.8e-15 85.1 267 30.0
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 3.7e-14 83.2 320 29.4
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 6.3e-14 82.4 149 40.3
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 6.3e-14 82.4 183 36.6
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.4e-13 81.3 211 31.8
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.4e-13 80.5 290 29.0
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 4.1e-13 79.7 188 30.3
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 5.4e-13 79.3 181 33.7
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 9.2e-13 78.6 204 33.8
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 9.2e-13 78.6 272 28.3
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.2e-12 78.2 184 34.2
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 3.5e-12 76.6 184 34.8
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 5.9e-12 75.9 184 34.8
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 5.9e-12 75.9 192 33.3
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.3e-11 74.7 171 36.3
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 6.6e-11 72.4 179 30.7
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 6.6e-11 72.4 199 34.2
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 8.6e-11 72.0 182 33.0
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 8.6e-11 72.0 209 34.0
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 1.1e-10 71.6 172 35.5
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.5e-10 71.2 190 33.2
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.5e-10 71.2 164 34.8
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 1.5e-10 71.2 172 34.9
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.9e-10 70.9 178 33.7
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 2.5e-10 70.5 174 32.8
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.5e-10 70.5 183 31.1
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 2.5e-10 70.5 154 33.8
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 5.6e-10 69.3 280 27.5
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 7.3e-10 68.9 178 31.5
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 7.3e-10 68.9 216 31.0
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 9.5e-10 68.6 178 31.5
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 9.5e-10 68.6 248 27.8
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.2e-09 68.2 171 34.5
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 4.7e-09 66.2 206 32.0
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 4.7e-09 66.2 153 37.3
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 6.1e-09 65.9 184 30.4
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 8.0e-09 65.5 178 34.3
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.4e-08 64.7 301 31.2
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 1.8e-08 64.3 189 31.7
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 2.3e-08 63.9 203 32.0
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.3e-08 63.9 180 31.7
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 3.0e-08 63.5 215 27.4
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 5.2e-08 62.8 189 30.7
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 5.2e-08 62.8 189 30.7
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 6.8e-08 62.4 351 26.8
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 6.8e-08 62.4 167 32.3
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 6.8e-08 62.4 160 37.5
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 8.9e-08 62.0 196 31.1
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 1.2e-07 61.6 189 30.2
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.5e-07 61.2 189 30.7
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 2.6e-07 60.5 190 30.0
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 3.4e-07 60.1 175 30.9
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 9.8e-07 58.5 196 33.2
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.3e-06 58.2 204 28.9
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.7e-06 57.8 249 29.7
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 3.7e-06 56.6 181 29.8
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 4.9e-06 56.2 258 30.6
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 6.4e-06 55.8 194 32.0
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 8.3e-06 55.5 172 32.6


User provided reference genes

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