Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.9e-162 576.2 399 100.0
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 5.9e-156 554.7 399 97.7
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.0e-147 527.3 397 95.5
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.0e-112 411.0 410 80.5
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.8e-112 410.2 413 70.7
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.2e-112 408.7 416 72.4
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 3.6e-81 306.2 313 65.2
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.2e-76 291.2 331 57.7
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 2.1e-60 237.3 332 50.9
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 4.8e-57 226.1 319 53.3
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.4e-55 219.9 334 51.5
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.5e-54 215.7 317 44.8
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 1.2e-52 211.5 331 50.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-52 211.1 316 50.0
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.7e-52 210.3 328 51.8
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 8.7e-51 205.3 332 49.4
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.7e-51 205.3 332 41.9
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 1.1e-48 198.4 319 50.2
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 2.4e-48 197.2 343 44.9
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 9.0e-48 195.3 327 48.9
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.2e-47 194.9 337 45.7
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.0e-47 194.1 328 47.6
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.6e-47 193.7 326 48.2
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 7.7e-47 192.2 338 47.6
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 3.8e-46 189.9 335 49.0
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 6.5e-46 189.1 331 45.0
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 1.9e-45 187.6 325 47.7
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.5e-45 187.2 332 49.4
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 7.2e-45 185.7 314 46.5
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 9.4e-45 185.3 328 46.6
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 3.6e-44 183.3 354 44.6
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.0e-43 181.8 316 40.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.3e-43 180.6 327 46.2
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.0e-42 177.6 329 44.1
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 2.5e-42 177.2 334 42.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 4.3e-42 176.4 220 48.2
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.7e-41 174.5 315 46.0
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 2.4e-40 170.6 319 46.4
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 5.9e-39 166.0 315 44.8
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.0e-38 165.2 318 36.2
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.0e-38 162.9 310 44.5
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.4e-37 161.4 325 43.4
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.9e-37 161.0 340 39.1
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 2.5e-37 160.6 327 41.9
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.8e-35 154.5 317 42.3
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.9e-35 153.3 263 41.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 3.9e-35 153.3 323 43.7
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.0e-34 151.0 191 45.5
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.3e-34 150.2 323 42.4
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 9.7e-34 148.7 316 43.7
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 9.7e-34 148.7 309 42.1
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 1.3e-33 148.3 324 43.5
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.3e-33 148.3 331 34.1
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 4.8e-33 146.4 264 49.2
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.1e-32 145.2 323 42.1
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.1e-32 145.2 325 43.7
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 2.4e-32 144.1 329 40.1
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 7.0e-32 142.5 336 42.3
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 1.6e-31 141.4 327 40.7
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.6e-31 140.6 328 43.0
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.3e-30 138.3 223 49.8
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.3e-30 138.3 333 42.0
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 5.0e-30 136.3 333 44.1
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 8.5e-30 135.6 316 35.1
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.5e-29 134.8 330 40.9
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.9e-29 134.4 329 41.6
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 5.5e-29 132.9 310 40.6
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 6.1e-28 129.4 316 42.7
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 4.4e-26 123.2 332 39.2
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 9.7e-26 122.1 312 40.4
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 2.8e-25 120.6 310 39.7
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 3.7e-25 120.2 331 39.6
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.4e-24 118.2 337 39.5
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 2.4e-24 117.5 170 45.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 4.1e-24 116.7 331 38.7
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.7e-23 114.0 172 43.0
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 7.7e-23 112.5 329 40.1
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.3e-22 111.7 81 63.0
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 2.9e-22 110.5 181 40.3
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 1.5e-21 108.2 325 35.4
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 5.5e-21 106.3 169 39.1
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 2.7e-20 104.0 323 31.0
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 1.4e-19 101.7 320 30.3
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.8e-19 101.3 323 30.0
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 4.0e-19 100.1 306 37.6
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 5.2e-19 99.8 201 37.3
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 6.8e-19 99.4 321 28.0
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 8.8e-19 99.0 213 35.7
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.0e-18 97.8 156 42.3
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 3.4e-18 97.1 199 38.2
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 3.4e-18 97.1 330 28.2
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 4.4e-18 96.7 323 28.2
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 7.5e-18 95.9 320 29.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.2e-17 94.4 89 49.4
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.1e-16 92.0 188 34.0
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 1.4e-16 91.7 182 36.3
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 2.0e-15 87.8 310 27.1
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 2.0e-15 87.8 315 33.7
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.5e-15 86.7 180 48.3
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 5.9e-15 86.3 169 39.6
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.3e-14 85.1 141 36.2
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.7e-14 84.7 342 27.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.2e-14 84.3 104 50.0
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 2.2e-14 84.3 146 35.6
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 3.8e-14 83.6 335 34.6
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 5.0e-14 83.2 86 46.5
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.9e-13 81.3 132 38.6
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 2.5e-13 80.9 138 40.6
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 3.2e-13 80.5 164 33.5
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 7.2e-13 79.3 168 39.9
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.6e-12 78.2 329 36.2
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 2.1e-12 77.8 338 33.4
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 2.3e-11 74.3 73 45.2
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.0e-11 73.9 142 35.9
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 5.2e-11 73.2 148 39.9
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 6.8e-11 72.8 333 35.4
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 8.8e-11 72.4 75 45.3
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 1.5e-10 71.6 62 51.6
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.6e-10 70.9 77 41.6
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.4e-10 70.1 154 37.7
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 9.8e-10 68.9 72 44.4
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 3.7e-09 67.0 46 63.0
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 3.7e-09 67.0 100 43.0
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 8.3e-09 65.9 76 39.5
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.8e-08 64.7 43 65.1
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.4e-08 64.3 73 43.8
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 3.1e-08 63.9 82 40.2
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 9.2e-08 62.4 73 38.4
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 2.0e-07 61.2 170 32.9
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 2.7e-07 60.8 96 33.3
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.5e-07 60.5 47 63.8
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 4.5e-07 60.1 77 37.7
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 7.7e-07 59.3 79 40.5
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.0e-06 58.9 44 63.6
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 1.3e-06 58.5 70 41.4
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 2.3e-06 57.8 145 35.2
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 2.9e-06 57.4 53 58.5
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 3.8e-06 57.0 94 40.4
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 3.8e-06 57.0 54 55.6
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 5.0e-06 56.6 153 32.7
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 6.6e-06 56.2 53 56.6
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 8.6e-06 55.8 88 39.8
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 8.6e-06 55.8 44 56.8


User provided reference genes

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