Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 1.9e-50 202.2 104 100.0
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 2.3e-43 178.7 95 97.9
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 1.9e-42 175.6 95 95.8
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 1.8e-40 169.1 95 91.6
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 2.6e-39 165.2 95 90.5
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 2.3e-35 152.1 97 83.5
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 1.1e-29 133.3 92 71.7
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 1.1e-29 133.3 91 72.5
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 1.9e-29 132.5 89 71.9
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 4.2e-29 131.3 89 70.8
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 7.9e-28 127.1 91 68.1
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 1.8e-27 125.9 90 68.9
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 3.9e-27 124.8 89 68.5
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 5.1e-27 124.4 89 69.7
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 1.9e-26 122.5 93 64.5
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.9e-26 122.5 89 68.5
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 2.5e-26 122.1 90 64.4
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 3.3e-26 121.7 90 67.8
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 3.3e-26 121.7 90 67.8
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 5.7e-26 120.9 89 67.4
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 5.7e-26 120.9 93 62.4
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 5.7e-26 120.9 88 69.3
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 5.7e-26 120.9 90 65.6
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 1.6e-25 119.4 89 68.5
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 2.1e-25 119.0 88 69.3
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 2.8e-25 118.6 89 68.5
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.7e-25 118.2 95 66.3
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 3.7e-25 118.2 89 67.4
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 4.8e-25 117.9 89 68.5
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 8.2e-25 117.1 94 66.0
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 1.1e-24 116.7 92 63.0
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 1.1e-24 116.7 89 68.5
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.4e-24 116.3 90 66.7
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 1.4e-24 116.3 89 67.4
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 1.8e-24 115.9 90 64.4
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 1.8e-24 115.9 90 66.7
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 5.3e-24 114.4 88 65.9
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 5.3e-24 114.4 88 67.0
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 9.0e-24 113.6 89 64.0
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 9.0e-24 113.6 89 64.0
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 2.0e-23 112.5 88 65.9
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 2.0e-23 112.5 108 58.3
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 3.4e-23 111.7 90 63.3
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 5.8e-23 110.9 94 62.8
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 7.6e-23 110.5 88 62.5
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 7.6e-23 110.5 73 82.2
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 7.6e-23 110.5 88 63.6
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 1.0e-22 110.2 89 61.8
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.3e-22 109.8 93 60.2
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.7e-22 109.4 89 61.8
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 2.2e-22 109.0 88 63.6
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 2.2e-22 109.0 92 62.0
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 8.4e-22 107.1 77 68.8
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 8.4e-22 107.1 77 68.8
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.1e-21 106.7 89 58.4
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.9e-21 105.9 92 58.7
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 1.9e-21 105.9 92 60.9
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 1.9e-21 105.9 88 63.6
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.9e-21 105.9 89 62.9
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 3.2e-21 105.1 88 62.5
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 3.2e-21 105.1 92 58.7
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 3.2e-21 105.1 86 64.0
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 7.2e-21 104.0 92 58.7
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 7.2e-21 104.0 88 61.4
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 9.3e-21 103.6 89 58.4
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 1.2e-20 103.2 92 58.7
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 1.2e-20 103.2 90 60.0
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 1.6e-20 102.8 90 58.9
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 1.6e-20 102.8 93 61.3
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 2.7e-20 102.1 88 60.2
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 2.7e-20 102.1 92 57.6
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 3.5e-20 101.7 88 60.2
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 3.5e-20 101.7 88 59.1
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 3.5e-20 101.7 104 53.8
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 3.5e-20 101.7 90 60.0
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 4.6e-20 101.3 88 59.1
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 6.1e-20 100.9 104 53.8
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 6.1e-20 100.9 88 59.1
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 7.9e-20 100.5 87 59.8
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 1.0e-19 100.1 92 58.7
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.0e-19 100.1 92 56.5
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 1.3e-19 99.8 88 60.2
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 1.8e-19 99.4 89 61.8
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 3.9e-19 98.2 88 58.0
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 1.9e-18 95.9 91 61.5
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 5.7e-18 94.4 90 55.6
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 6.3e-17 90.9 83 57.8
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 5.3e-16 87.8 70 61.4
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 9.0e-16 87.0 91 51.6
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 1.5e-15 86.3 89 58.4
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 1.5e-15 86.3 89 58.4
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.5e-15 86.3 100 52.0
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 2.0e-15 85.9 89 58.4
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.0e-15 85.9 89 58.4
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 2.0e-15 85.9 89 58.4
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 2.6e-15 85.5 93 57.0
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 4.5e-15 84.7 119 45.4
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 4.5e-15 84.7 66 60.6
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 5.9e-15 84.3 89 57.3
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 5.9e-15 84.3 115 42.6
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 1.0e-14 83.6 89 57.3
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.0e-14 83.6 68 58.8
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 3.8e-14 81.6 88 56.8
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 1.1e-13 80.1 75 58.7
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 1.1e-13 80.1 68 61.8
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 7.2e-13 77.4 65 61.5
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.0e-11 73.6 66 54.5
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.0e-11 73.6 66 54.5
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.0e-11 73.6 68 52.9
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 6.7e-11 70.9 65 55.4
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.1e-10 70.1 66 54.5
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 1.1e-10 70.1 74 54.1
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.1e-10 70.1 85 45.9
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 1.5e-10 69.7 66 53.0
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 1.3e-09 66.6 66 53.0
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 1.7e-09 66.2 82 50.0
Nitab4.5_0001041g0050 Nicotiana tabacum HOM05D006603 ORTHO05D007786 3.7e-09 65.1 36 88.9
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 5.3e-08 61.2 83 44.6
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.2e-07 60.1 83 44.6
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 3.4e-07 58.5 80 43.8
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.0e-06 57.0 91 39.6
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-06 56.6 79 44.3
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 1.7e-06 56.2 63 49.2
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 8.5e-06 53.9 67 43.3


User provided reference genes

Program Settings