Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.1e-47 193.0 98 100.0
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.4e-42 176.0 98 92.9
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 9.0e-42 173.3 98 90.8
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 5.5e-39 164.1 99 86.9
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 3.6e-30 134.8 99 75.8
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.8e-29 132.5 99 74.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 2.9e-24 115.2 99 71.7
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 4.2e-23 111.3 96 62.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 4.7e-22 107.8 96 60.4
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 3.0e-21 105.1 100 56.0
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 6.7e-21 104.0 71 70.4
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 8.8e-21 103.6 102 58.8
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 1.5e-20 102.8 101 58.4
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.3e-20 101.7 102 56.9
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 3.3e-20 101.7 95 58.9
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 5.7e-20 100.9 70 68.6
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 5.7e-20 100.9 70 70.0
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 1.3e-19 99.8 102 54.9
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.3e-19 99.8 70 70.0
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 4.8e-19 97.8 92 58.7
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 4.8e-19 97.8 93 59.1
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.8e-18 95.9 95 52.6
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.8e-18 95.9 97 55.7
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.4e-18 95.5 66 68.2
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 3.1e-18 95.1 100 55.0
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 4.1e-18 94.7 72 63.9
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 5.3e-18 94.4 62 72.6
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 5.3e-18 94.4 94 55.3
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 7.0e-18 94.0 98 55.1
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 7.0e-18 94.0 66 65.2
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 7.0e-18 94.0 72 65.3
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.2e-17 93.2 66 65.2
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 1.6e-17 92.8 94 54.3
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.6e-17 92.8 100 53.0
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.6e-17 92.8 98 50.0
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 2.0e-17 92.4 61 72.1
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 3.5e-17 91.7 71 63.4
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 5.9e-17 90.9 99 53.5
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 5.9e-17 90.9 94 53.2
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 5.9e-17 90.9 105 49.5
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 5.9e-17 90.9 74 62.2
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.7e-17 90.5 64 67.2
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 1.0e-16 90.1 67 62.7
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.7e-16 89.4 69 63.8
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.9e-16 88.6 109 49.5
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 3.8e-16 88.2 71 60.6
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 5.0e-16 87.8 103 47.6
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 6.5e-16 87.4 101 50.5
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 8.5e-16 87.0 67 64.2
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 8.5e-16 87.0 83 54.2
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.5e-16 87.0 101 49.5
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.5e-16 87.0 101 49.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.1e-15 86.7 66 62.1
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 1.1e-15 86.7 67 65.7
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.5e-15 86.3 67 59.7
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 1.5e-15 86.3 66 63.6
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.5e-15 86.3 92 53.3
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.5e-15 86.3 72 58.3
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.9e-15 85.9 103 50.5
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 4.2e-15 84.7 67 59.7
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 4.2e-15 84.7 74 60.8
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 4.2e-15 84.7 67 59.7
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 4.2e-15 84.7 100 50.0
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 7.2e-15 84.0 70 58.6
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 7.2e-15 84.0 67 59.7
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 7.2e-15 84.0 98 49.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 7.2e-15 84.0 109 47.7
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 9.4e-15 83.6 67 59.7
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 9.4e-15 83.6 67 59.7
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 1.6e-14 82.8 109 53.2
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 2.1e-14 82.4 56 67.9
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 2.1e-14 82.4 62 66.1
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 2.1e-14 82.4 62 66.1
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 3.6e-14 81.6 61 65.6
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 3.6e-14 81.6 61 65.6
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 6.1e-14 80.9 98 46.9
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 6.1e-14 80.9 98 46.9
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 1.0e-13 80.1 70 55.7
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 1.8e-13 79.3 110 52.7
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 1.8e-13 79.3 98 45.9
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 2.3e-13 79.0 97 45.4
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.0e-13 78.6 55 69.1
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 8.8e-13 77.0 104 51.9
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 8.8e-13 77.0 105 50.5
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.5e-12 76.3 54 66.7
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 2.0e-12 75.9 125 39.2
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 2.0e-12 75.9 104 47.1
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 4.4e-12 74.7 106 47.2
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 5.7e-12 74.3 113 42.5
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 7.5e-12 73.9 54 64.8
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 7.5e-12 73.9 54 64.8
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 7.5e-12 73.9 54 64.8
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.3e-11 73.2 54 64.8
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.7e-11 72.8 118 38.1
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 1.7e-11 72.8 105 45.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.2e-11 72.4 100 47.0
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.2e-11 72.4 100 47.0
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 63.0
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 63.0
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 63.0
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 63.0
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 3.7e-11 71.6 78 48.7
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 6.3e-11 70.9 100 46.0
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 6.3e-11 70.9 111 45.0
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 6.3e-11 70.9 70 57.1
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 1.1e-10 70.1 77 51.9
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 1.4e-10 69.7 54 63.0
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 1.4e-10 69.7 54 63.0
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 1.4e-10 69.7 94 41.5
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 1.8e-10 69.3 77 53.2
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 3.1e-10 68.6 74 52.7
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 5.4e-10 67.8 53 60.4
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 9.1e-10 67.0 47 66.0
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 9.1e-10 67.0 97 45.4
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.6e-09 66.2 45 68.9
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 2.0e-09 65.9 95 46.3
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 2.0e-09 65.9 95 46.3
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 4.5e-09 64.7 44 68.2
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 4.5e-09 64.7 44 68.2
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 4.5e-09 64.7 46 60.9
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 1.0e-08 63.5 41 70.7
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.3e-08 63.2 61 57.4
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 1.7e-08 62.8 42 66.7
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 2.2e-08 62.4 83 45.8
unitig_749.g13516 Utricularia gibba HOM05D005475 ORTHO05D006575 3.8e-08 61.6 91 46.2
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 5.0e-08 61.2 50 64.0
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 6.5e-08 60.8 82 43.9
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 6.5e-08 60.8 46 58.7
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 6.5e-08 60.8 73 47.9
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 8.5e-08 60.5 58 55.2
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 8.5e-08 60.5 58 55.2
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 8.5e-08 60.5 58 55.2
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 1.1e-07 60.1 71 54.9
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 1.1e-07 60.1 80 45.0
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 2.5e-07 58.9 64 51.6
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 4.2e-07 58.2 77 46.8
DCAR_027337 Daucus carota HOM05D005475 ORTHO05D006575 7.2e-07 57.4 73 45.2
Migut.G00489 Erythranthe guttata HOM05D005475 ORTHO05D006575 2.1e-06 55.8 85 44.7
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 2.1e-06 55.8 94 40.4
HPP92_007739 Vanilla planifolia HOM05D005475 ORTHO05D006575 3.6e-06 55.1 39 61.5


User provided reference genes

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