Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 0.0e+00 1819.3 983 100.0
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 0.0e+00 1727.6 955 98.5
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 0.0e+00 1690.6 954 96.1
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 0.0e+00 1396.7 1075 74.3
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 0.0e+00 1395.6 1038 75.0
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 0.0e+00 1377.1 1010 77.9
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 0.0e+00 1283.5 957 74.9
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.2e-298 1030.0 1038 55.8
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.3e-286 989.2 987 56.3
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 7.4e-285 984.2 1032 56.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.2e-284 982.6 1032 55.1
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 2.3e-278 962.6 981 55.7
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 6.9e-275 951.0 1032 54.1
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 9.1e-275 950.7 996 54.4
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 7.2e-272 941.0 979 55.4
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.7e-271 939.1 952 56.0
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 2.6e-266 922.5 1045 53.3
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.0e-265 920.6 964 54.8
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 5.0e-265 918.3 1067 50.7
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.1e-263 912.9 994 52.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.4e-262 910.2 951 55.4
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.8e-262 909.8 990 53.2
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.3e-262 909.4 1016 52.5
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.7e-260 903.3 1015 52.3
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 8.2e-260 901.0 995 53.1
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.1e-259 900.6 981 53.0
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.8e-259 899.8 1017 50.9
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.4e-259 899.4 1035 52.5
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 2.0e-258 896.3 979 52.6
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.6e-258 896.0 987 53.7
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 3.5e-258 895.6 995 52.7
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 2.2e-257 892.9 936 54.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.2e-257 892.9 1039 52.6
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 5.5e-256 888.3 1025 51.2
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.1e-255 884.8 1194 45.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 8.0e-255 884.4 911 55.2
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 6.8e-254 881.3 964 52.3
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 3.4e-253 879.0 997 51.9
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 9.7e-253 877.5 1046 50.5
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.7e-252 875.5 947 54.0
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 3.7e-252 875.5 980 53.3
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.7e-252 875.5 986 52.6
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 4.1e-251 872.1 999 52.1
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.0e-250 869.8 946 53.7
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 2.0e-250 869.8 1092 47.4
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.7e-250 869.4 1024 52.2
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.0e-249 867.5 978 52.8
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 6.5e-249 864.8 952 51.6
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 8.5e-249 864.4 982 51.9
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.9e-248 863.2 1018 50.6
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 2.7e-247 859.4 1025 49.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 3.6e-247 859.0 1025 49.9
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 3.6e-247 859.0 1150 46.9
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 6.1e-247 858.2 1000 50.8
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 8.0e-247 857.8 1025 49.3
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.0e-246 857.4 994 51.6
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 2.3e-246 856.3 1033 50.5
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 6.8e-246 854.7 983 51.4
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 8.8e-246 854.4 1011 50.6
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.8e-245 850.9 981 50.8
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.3e-244 850.5 996 50.3
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.8e-244 849.4 743 59.9
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 4.5e-242 842.0 981 51.7
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.0e-241 840.9 894 54.1
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 1.3e-241 840.5 1009 51.1
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 8.6e-241 837.8 973 50.5
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 2.5e-240 836.3 964 50.8
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 2.8e-239 832.8 978 49.8
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.8e-238 830.1 997 51.2
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.0e-237 826.6 1034 48.5
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 2.4e-235 819.7 986 49.7
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.2e-234 817.4 964 50.0
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.0e-233 814.3 1044 48.5
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.7e-233 813.5 1023 48.3
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.1e-232 810.8 974 49.2
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.6e-232 808.5 986 49.3
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.1e-231 806.6 974 49.7
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 3.6e-231 805.8 991 47.8
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.4e-230 803.9 741 57.6
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 5.2e-230 802.0 979 49.0
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 5.8e-229 798.5 959 49.0
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 4.9e-228 795.4 958 48.2
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 8.3e-228 794.7 1063 46.6
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.9e-227 793.5 1035 48.7
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 3.2e-227 792.7 972 48.0
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 3.2e-227 792.7 979 48.0
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.4e-227 792.0 994 47.7
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 3.0e-225 786.2 983 49.3
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.9e-224 783.5 984 48.1
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 2.5e-224 783.1 961 48.2
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.3e-224 781.6 1040 46.5
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.4e-222 777.3 1005 48.0
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 8.9e-222 774.6 952 47.4
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 3.4e-221 772.7 952 47.0
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 8.3e-220 768.1 958 47.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 2.7e-218 763.1 1002 48.4
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.5e-216 756.5 971 46.8
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 7.3e-216 755.0 697 57.1
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 3.6e-215 752.7 757 53.0
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.4e-214 750.7 701 56.9
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.0e-214 749.2 990 45.7
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.7e-212 743.8 722 54.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 6.4e-212 741.9 720 54.9
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 8.3e-212 741.5 696 55.6
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 5.4e-211 738.8 738 53.3
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 3.9e-209 732.6 985 46.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 6.2e-207 725.3 965 47.9
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.1e-206 724.5 941 46.4
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 5.2e-206 722.2 936 46.9
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 3.0e-201 706.4 847 48.3
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 5.8e-197 692.2 754 51.1
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 4.5e-189 666.0 721 50.5
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 7.1e-187 658.7 837 45.9
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.2e-171 606.7 850 44.2
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 5.1e-169 599.4 1056 39.8
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.3e-159 568.2 744 43.4
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 5.0e-156 556.2 884 41.9
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 5.0e-148 529.6 737 42.1
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 9.7e-144 515.4 745 44.6
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 4.4e-120 436.8 696 39.4
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.2e-106 392.1 585 37.6
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.4e-102 378.6 921 30.5
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 5.4e-102 376.7 303 58.4
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.4e-96 357.5 1002 29.4
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.8e-89 335.1 461 38.8
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 7.4e-43 180.3 114 72.8
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.4e-41 176.0 114 73.7
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 3.6e-29 134.8 391 27.1
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.7e-29 134.4 146 52.7
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.4e-27 127.9 333 38.4
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 5.7e-27 127.5 186 44.6
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.1e-13 80.9 78 59.0
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 3.0e-12 78.6 106 42.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-11 76.6 106 42.5
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 2.6e-11 75.5 166 33.7
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 3.4e-11 75.1 166 33.7
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.6e-08 66.2 79 46.8


User provided reference genes

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