Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 1.7e-125 452.6 214 100.0
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.8e-119 432.6 248 85.5
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 3.8e-117 424.9 248 83.9
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.3e-112 409.8 246 80.9
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.4e-110 401.7 199 94.0
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 3.4e-110 401.7 199 92.0
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 5.5e-108 394.4 199 93.0
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 3.0e-98 362.1 194 83.0
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 4.3e-97 358.2 195 81.0
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 3.7e-96 355.1 198 78.8
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 6.3e-96 354.4 199 81.9
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 8.2e-96 354.0 199 79.4
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 1.4e-95 353.2 195 81.5
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 4.1e-95 351.7 197 80.2
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 4.1e-95 351.7 199 80.9
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.0e-94 349.4 199 78.4
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 4.5e-94 348.2 199 79.9
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 5.9e-94 347.8 198 80.3
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 7.6e-94 347.4 198 79.3
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 2.9e-93 345.5 202 78.2
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 6.5e-93 344.4 202 76.2
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.9e-92 342.8 202 76.2
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 4.2e-92 341.7 193 78.8
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.5e-92 341.3 199 78.4
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 7.2e-92 340.9 198 75.8
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 7.2e-92 340.9 194 78.9
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.6e-91 339.7 202 75.2
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.7e-91 339.0 202 76.2
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 2.7e-91 339.0 198 76.3
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.6e-91 338.2 213 73.2
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 6.1e-91 337.8 197 78.2
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.3e-90 336.7 202 74.3
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 1.8e-90 336.3 204 76.5
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 1.8e-90 336.3 184 81.0
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.3e-90 335.9 198 76.3
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.0e-90 335.5 213 72.3
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 3.0e-90 335.5 199 78.4
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 3.9e-90 335.1 203 75.9
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 3.9e-90 335.1 194 76.3
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 6.7e-90 334.3 198 76.3
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.7e-90 334.0 196 75.5
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.5e-89 333.2 188 79.8
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 2.5e-89 332.4 189 76.2
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.5e-89 332.4 198 75.3
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 2.5e-89 332.4 204 73.0
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 4.3e-89 331.6 212 71.2
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 7.4e-89 330.9 206 75.7
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 9.7e-89 330.5 196 75.0
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 9.7e-89 330.5 194 75.8
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 9.7e-89 330.5 194 75.8
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.3e-88 330.1 210 73.8
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.3e-88 330.1 190 77.9
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.6e-88 329.7 212 70.8
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 2.2e-88 329.3 178 78.7
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 2.2e-88 329.3 206 75.7
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 2.8e-88 328.9 194 74.2
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 2.8e-88 328.9 203 71.4
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 3.7e-88 328.6 177 79.7
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 8.2e-88 327.4 194 74.7
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-87 326.6 212 70.3
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 1.8e-87 326.2 203 74.4
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.8e-87 326.2 194 76.8
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.8e-87 326.2 196 75.0
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.8e-87 326.2 233 66.1
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 3.1e-87 325.5 198 75.8
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 3.1e-87 325.5 190 78.4
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.1e-87 325.5 206 70.4
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 6.9e-87 324.3 197 75.1
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 6.9e-87 324.3 202 73.3
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.2e-86 323.6 178 78.1
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.5e-86 323.2 203 73.9
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 4.5e-86 321.6 203 72.4
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 5.9e-86 321.2 190 75.8
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 7.7e-86 320.9 197 73.6
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.0e-85 320.5 192 75.5
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.0e-85 320.5 212 68.9
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.3e-85 320.1 203 72.4
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 6.5e-85 317.8 178 77.5
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 6.5e-85 317.8 178 77.5
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 6.5e-85 317.8 203 69.5
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.1e-84 317.0 208 69.7
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 1.4e-84 316.6 190 73.2
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 3.2e-84 315.5 197 72.1
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 4.2e-84 315.1 178 76.4
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 4.2e-84 315.1 194 72.7
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 9.4e-84 313.9 201 69.7
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.6e-83 311.6 196 72.4
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 7.9e-83 310.8 178 76.4
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.0e-82 310.5 202 71.3
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 1.4e-82 310.1 194 70.6
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 1.4e-82 310.1 186 74.2
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.4e-82 310.1 203 67.5
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 2.3e-82 309.3 194 70.6
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 2.3e-82 309.3 224 67.9
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 8.8e-82 307.4 229 67.2
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 2.0e-81 306.2 188 71.8
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.7e-80 303.1 181 72.9
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.7e-80 303.1 181 72.9
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.7e-80 303.1 190 70.5
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.7e-80 303.1 184 71.2
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.8e-80 302.4 181 72.4
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 4.8e-80 301.6 181 72.4
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.8e-80 301.6 279 54.1
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 4.8e-80 301.6 338 47.0
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.0e-77 293.9 202 68.3
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 1.1e-76 290.4 197 68.0
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 9.7e-73 277.3 188 67.0
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-72 276.9 210 65.7
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 6.3e-72 274.6 204 63.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.9e-69 265.8 163 75.5
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.9e-68 263.1 178 64.0
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.4e-66 256.9 155 74.2
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.0e-65 253.1 132 84.1
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.3e-64 248.1 166 66.9
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.3e-63 245.0 187 62.0
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 2.0e-62 243.0 161 67.1
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 4.5e-62 241.9 221 57.0
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.8e-61 238.8 158 69.6
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.1e-60 237.3 168 67.3
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.5e-60 235.0 206 57.3
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.3e-58 229.6 159 67.3
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 2.3e-58 229.6 162 61.7
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 7.5e-57 224.6 128 72.7
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.8e-55 219.9 129 76.0
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.5e-54 215.7 197 53.8
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.5e-54 215.3 152 63.8
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 5.9e-54 214.9 143 69.9
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 6.1e-51 204.9 128 71.1
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 4.7e-43 178.7 113 71.7
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 6.1e-43 178.3 126 58.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 5.6e-36 155.2 119 60.5
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 7.3e-36 154.8 113 61.9
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 4.7e-35 152.1 181 40.9
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 7.5e-33 144.8 99 63.6
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.7e-30 136.3 92 66.3
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.4e-24 115.2 132 50.8
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 3.8e-08 62.8 57 59.6
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.8e-08 62.8 32 81.2


User provided reference genes

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