Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g089520.4 Solanum lycopersicum HOM05D018538 ORTHO05D036931 8.0e-61 236.9 117 100.0
Sopen09g032460 Solanum pennellii HOM05D018538 ORTHO05D000653 3.6e-53 211.5 112 92.0
Sopen09g032440 Solanum pennellii HOM05D018538 ORTHO05D000653 2.0e-48 195.7 116 86.2
Sopen09g032450 Solanum pennellii HOM05D018538 ORTHO05D000653 5.9e-48 194.1 118 83.1
Solyc09g089500.3 Solanum lycopersicum HOM05D018538 ORTHO05D000653 2.5e-38 162.2 111 71.2
Nitab4.5_0000525g0290 Nicotiana tabacum HOM05D018538 ORTHO05D036931 2.0e-24 115.9 130 52.3
Nitab4.5_0003154g0030 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.4e-17 92.4 114 50.0
Sopen09g032410 Solanum pennellii HOM05D001004 ORTHO05D000653 5.4e-17 91.3 98 48.0
Solyc09g084480.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 2.7e-16 89.0 111 44.1
Solyc09g084460.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 3.5e-16 88.6 98 48.0
Solyc09g084470.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 3.5e-16 88.6 98 46.9
Peaxi162Scf00714g00217 Petunia axillaris HOM05D001004 ORTHO05D000653 6.0e-16 87.8 112 47.3
PGSC0003DMG400003056 Solanum tuberosum HOM05D001004 ORTHO05D000653 1.7e-15 86.3 122 44.3
Peaxi162Scf00714g00213 Petunia axillaris HOM05D001004 ORTHO05D000653 3.0e-15 85.5 112 45.5
Sopen08g028940 Solanum pennellii HOM05D001004 ORTHO05D000653 3.0e-15 85.5 114 48.2
CAN.G859.1 Capsicum annuum HOM05D001004 ORTHO05D000653 5.1e-15 84.7 122 43.4
Solyc08g080630.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 6.6e-15 84.3 114 47.4
Solyc09g084450.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 8.6e-15 84.0 98 46.9
CAN.G1098.2 Capsicum annuum HOM05D001004 ORTHO05D000653 1.5e-14 83.2 113 46.9
CAN.G1871.1 Capsicum annuum HOM05D001004 ORTHO05D000653 1.9e-14 82.8 113 45.1
Solyc09g084490.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 9.5e-14 80.5 99 43.4
Sopen09g032420 Solanum pennellii HOM05D001004 ORTHO05D000653 5.8e-11 71.2 87 41.4
Nitab4.5_0000754g0170 Nicotiana tabacum HOM05D001004 ORTHO05D000653 7.5e-11 70.9 113 41.6
Solyc09g083435.1 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.7e-10 69.7 109 38.5
Solyc09g089530.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 3.7e-10 68.6 103 37.9
PGSC0003DMG400012089 Solanum tuberosum HOM05D001004 ORTHO05D000653 4.9e-10 68.2 87 41.4
Nitab4.5_0013087g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.4e-09 65.9 114 37.7
EL10Ac8g18696 Beta vulgaris HOM05D001004 ORTHO05D000653 4.1e-09 65.1 68 47.1
Sopen10g035470 Solanum pennellii HOM05D001004 ORTHO05D000653 4.1e-09 65.1 113 38.9
Sopen09g032430 Solanum pennellii HOM05D001004 ORTHO05D000653 5.4e-09 64.7 75 45.3
PGSC0003DMG400017587 Solanum tuberosum HOM05D001004 ORTHO05D000653 9.2e-09 63.9 113 39.8
Solyc10g086100.2 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.2e-08 63.5 113 38.1
Carub.0008s0506 Capsella rubella HOM05D001004 ORTHO05D000653 1.6e-08 63.2 67 44.8
SalBow6G7260 Salvia bowleyana HOM05D001004 ORTHO05D000653 1.6e-08 63.2 68 48.5
Sp2g08390 Schrenkiella parvula HOM05D001004 ORTHO05D000653 2.7e-08 62.4 67 46.3
Eucgr.I00166 Eucalyptus grandis HOM05D001004 ORTHO05D000653 6.0e-08 61.2 71 46.5
Eucgr.I00167 Eucalyptus grandis HOM05D001004 ORTHO05D000653 6.0e-08 61.2 71 46.5
Thhalv10003342m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 6.0e-08 61.2 67 44.8
Sopen09g032390 Solanum pennellii HOM05D001004 ORTHO05D000653 6.0e-08 61.2 86 38.4
Carub.0008s0505 Capsella rubella HOM05D001004 ORTHO05D000653 7.8e-08 60.8 67 43.3
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 7.8e-08 60.8 76 40.8
HanXRQChr01g0014551 Helianthus annuus HOM05D001004 ORTHO05D000653 7.8e-08 60.8 66 45.5
Manes.05G086331 Manihot esculenta HOM05D001004 ORTHO05D000653 1.3e-07 60.1 70 40.0
HanXRQChr01g0007271 Helianthus annuus HOM05D001004 ORTHO05D000653 1.7e-07 59.7 64 46.9
Thhalv10003305m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 2.3e-07 59.3 67 44.8
SalBow6G2951 Salvia bowleyana HOM05D001004 ORTHO05D000653 2.3e-07 59.3 70 44.3
AT2G38870 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 3.0e-07 58.9 68 45.6
SalBow6G4720 Salvia bowleyana HOM05D001004 ORTHO05D000653 3.0e-07 58.9 68 47.1
Solyc10g086090.2 Solanum lycopersicum HOM05D001004 ORTHO05D000653 3.0e-07 58.9 114 37.7
Sopen10g035460 Solanum pennellii HOM05D001004 ORTHO05D000653 3.0e-07 58.9 114 37.7
CARHR180000 Cardamine hirsuta HOM05D001004 ORTHO05D000653 3.9e-07 58.5 62 45.2
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 3.9e-07 58.5 68 44.1
AUR62011910 Chenopodium quinoa HOM05D001004 ORTHO05D000653 5.1e-07 58.2 68 44.1
AUR62032226 Chenopodium quinoa HOM05D001004 ORTHO05D000653 5.1e-07 58.2 65 44.6
HanXRQChr01g0007291 Helianthus annuus HOM05D001004 ORTHO05D000653 5.1e-07 58.2 67 41.8
Nitab4.5_0000754g0140 Nicotiana tabacum HOM05D001004 ORTHO05D000653 5.1e-07 58.2 65 44.6
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 6.6e-07 57.8 68 45.6
AT5G43580 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 6.6e-07 57.8 67 44.8
SalBow6G4960 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.6e-07 57.8 68 47.1
SalBow6G5398 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.6e-07 57.8 68 44.1
A04p14760 Brassica napus HOM05D001004 ORTHO05D000653 8.6e-07 57.4 70 44.3
HanXRQChr01g0007331 Helianthus annuus HOM05D001004 ORTHO05D000653 8.6e-07 57.4 62 46.8
HanXRQChr01g0007351 Helianthus annuus HOM05D001004 ORTHO05D000653 8.6e-07 57.4 67 41.8
Nitab4.5_0006346g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 8.6e-07 57.4 68 42.6
AUR62011909 Chenopodium quinoa HOM05D001004 ORTHO05D000653 1.5e-06 56.6 68 41.2
Lsat_1_v5_gn_3_123400 Lactuca sativa HOM05D001004 ORTHO05D000653 1.5e-06 56.6 66 50.0
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 1.9e-06 56.2 68 42.6
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 1.9e-06 56.2 67 40.3
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 1.9e-06 56.2 68 44.1
Sopen09g032370 Solanum pennellii HOM05D001004 ORTHO05D000653 1.9e-06 56.2 80 40.0
Carub.0004s2089 Capsella rubella HOM05D001004 ORTHO05D000653 2.5e-06 55.8 68 45.6
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.5e-06 55.8 68 47.1
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.5e-06 55.8 68 47.1
Medtr1g075340 Medicago truncatula HOM05D001004 ORTHO05D000653 2.5e-06 55.8 68 41.2
PSO210G3122 Papaver somniferum HOM05D001004 ORTHO05D000653 2.5e-06 55.8 75 38.7
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 2.5e-06 55.8 68 44.1
EL10Ac5g10439 Beta vulgaris HOM05D001004 ORTHO05D000653 3.3e-06 55.5 67 43.3
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 3.3e-06 55.5 69 43.5
BcaB01g03622 Brassica carinata HOM05D001004 ORTHO05D000653 4.3e-06 55.1 68 42.6
ClCG06G013030 Citrullus lanatus HOM05D001004 ORTHO05D000653 4.3e-06 55.1 67 44.8
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.3e-06 55.1 68 47.1
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 4.3e-06 55.1 66 45.5
CsaV3_5G013330 Cucumis sativus L. HOM05D001004 ORTHO05D000653 4.3e-06 55.1 67 41.8
HanXRQChr01g0005421 Helianthus annuus HOM05D001004 ORTHO05D000653 4.3e-06 55.1 64 43.8
HanXRQChr01g0005431 Helianthus annuus HOM05D001004 ORTHO05D000653 4.3e-06 55.1 64 43.8
PSO339G6102 Papaver somniferum HOM05D001004 ORTHO05D000653 4.3e-06 55.1 55 47.3
Phvul.007G125500 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 4.3e-06 55.1 68 39.7
Eucgr.C02276 Eucalyptus grandis HOM05D001004 ORTHO05D000653 5.6e-06 54.7 66 40.9
Thhalv10011055m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 5.6e-06 54.7 66 43.9
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.6e-06 54.7 68 44.1
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 5.6e-06 54.7 68 44.1
HanXRQChr01g0014571 Helianthus annuus HOM05D001004 ORTHO05D000653 5.6e-06 54.7 62 46.8
Lalb_Chr02g0150361 Lupinus albus HOM05D001004 ORTHO05D000653 5.6e-06 54.7 66 45.5
Lalb_Chr02g0150371 Lupinus albus HOM05D001004 ORTHO05D000653 5.6e-06 54.7 66 42.4
Nn1g02639 Nelumbo nucifera HOM05D001004 ORTHO05D000653 5.6e-06 54.7 68 42.6
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 5.6e-06 54.7 68 44.1
BcaC02g07440 Brassica carinata HOM05D001004 ORTHO05D000653 7.3e-06 54.3 68 42.6
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 7.3e-06 54.3 68 41.2
CSS0019702 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 9.5e-06 53.9 68 41.2
Carub.0008s0507 Capsella rubella HOM05D001004 ORTHO05D000653 9.5e-06 53.9 65 44.6
COL.COLO4_12152 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.5e-06 53.9 68 42.6
PSO210G2978 Papaver somniferum HOM05D001004 ORTHO05D000653 9.5e-06 53.9 75 38.7
SalBow6G5314 Salvia bowleyana HOM05D001004 ORTHO05D000653 9.5e-06 53.9 68 44.1


User provided reference genes

Program Settings