Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g083435.1 Solanum lycopersicum HOM05D001004 ORTHO05D000653 9.8e-46 186.4 93 100.0
Solyc09g089530.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 4.1e-28 127.9 116 65.5
Solyc09g084470.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.1e-25 119.8 110 60.9
Solyc09g084450.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.9e-25 119.0 108 60.2
Sopen09g032410 Solanum pennellii HOM05D001004 ORTHO05D000653 3.3e-25 118.2 110 59.1
Solyc09g084460.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 2.3e-23 112.1 110 56.4
Solyc09g084490.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 4.0e-23 111.3 111 55.9
Solyc09g084480.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 9.9e-22 106.7 112 54.5
Nitab4.5_0013087g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 1.6e-16 89.4 93 49.5
Nitab4.5_0003154g0030 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.1e-16 89.0 106 43.4
CAN.G1098.2 Capsicum annuum HOM05D001004 ORTHO05D000653 6.2e-16 87.4 106 45.3
Sopen10g035470 Solanum pennellii HOM05D001004 ORTHO05D000653 1.8e-15 85.9 93 46.2
Nitab4.5_0000754g0170 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.4e-15 85.5 94 44.7
Nitab4.5_0000754g0140 Nicotiana tabacum HOM05D001004 ORTHO05D000653 4.0e-15 84.7 91 47.3
Solyc10g086100.2 Solanum lycopersicum HOM05D001004 ORTHO05D000653 4.0e-15 84.7 93 47.3
CAN.G1871.1 Capsicum annuum HOM05D001004 ORTHO05D000653 1.5e-14 82.8 106 42.5
PGSC0003DMG400017587 Solanum tuberosum HOM05D001004 ORTHO05D000653 1.5e-14 82.8 93 46.2
Solyc09g089500.3 Solanum lycopersicum HOM05D018538 ORTHO05D000653 7.6e-14 80.5 113 41.6
PGSC0003DMG400012089 Solanum tuberosum HOM05D001004 ORTHO05D000653 1.3e-13 79.7 66 59.1
Sopen09g032370 Solanum pennellii HOM05D001004 ORTHO05D000653 2.9e-13 78.6 64 60.9
Solyc08g080630.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 8.4e-13 77.0 67 52.2
Sopen08g028940 Solanum pennellii HOM05D001004 ORTHO05D000653 8.4e-13 77.0 67 52.2
Peaxi162Scf00714g00213 Petunia axillaris HOM05D001004 ORTHO05D000653 1.1e-12 76.6 110 37.3
Sopen09g032430 Solanum pennellii HOM05D001004 ORTHO05D000653 1.1e-12 76.6 66 57.6
PGSC0003DMG400003056 Solanum tuberosum HOM05D001004 ORTHO05D000653 1.4e-12 76.3 67 52.2
Sopen09g032420 Solanum pennellii HOM05D001004 ORTHO05D000653 1.9e-12 75.9 66 57.6
Peaxi162Scf00714g00217 Petunia axillaris HOM05D001004 ORTHO05D000653 3.2e-12 75.1 64 51.6
PGSC0003DMG400017588 Solanum tuberosum HOM05D001004 ORTHO05D000653 3.2e-12 75.1 90 43.3
CAN.G859.1 Capsicum annuum HOM05D001004 ORTHO05D000653 4.2e-12 74.7 67 50.7
Solyc10g086090.2 Solanum lycopersicum HOM05D001004 ORTHO05D000653 5.4e-12 74.3 94 43.6
Sopen09g032390 Solanum pennellii HOM05D001004 ORTHO05D000653 5.4e-12 74.3 65 53.8
Sopen10g035460 Solanum pennellii HOM05D001004 ORTHO05D000653 5.4e-12 74.3 94 43.6
Nitab4.5_0006346g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 1.2e-11 73.2 66 53.0
Solyc09g083430.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.2e-11 73.2 70 51.4
Sopen09g032450 Solanum pennellii HOM05D018538 ORTHO05D000653 1.6e-11 72.8 111 36.9
CAN.G1837.2 Capsicum annuum HOM05D001004 ORTHO05D000653 2.7e-11 72.0 91 42.9
Solyc09g089520.4 Solanum lycopersicum HOM05D018538 ORTHO05D036931 3.5e-11 71.6 109 38.5
Sed0001107 Sechium edule HOM05D001004 ORTHO05D000653 4.6e-11 71.2 66 53.0
ClCG06G013020 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.0e-10 70.1 66 54.5
CsaV3_5G013330 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.9e-10 68.2 66 50.0
Sed0022845 Sechium edule HOM05D001004 ORTHO05D000653 3.9e-10 68.2 66 48.5
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 5.1e-10 67.8 66 51.5
ClCG06G013030 Citrullus lanatus HOM05D001004 ORTHO05D000653 6.6e-10 67.4 66 54.5
ClCG07G000740 Citrullus lanatus HOM05D001004 ORTHO05D000653 8.7e-10 67.0 66 50.0
Sopen09g032460 Solanum pennellii HOM05D018538 ORTHO05D000653 1.1e-09 66.6 107 37.4
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 1.9e-09 65.9 66 48.5
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 1.9e-09 65.9 66 48.5
GSVIVG01018139001 Vitis vinifera HOM05D001004 ORTHO05D000653 1.9e-09 65.9 72 47.2
BcaB07g30343 Brassica carinata HOM05D001004 ORTHO05D000653 2.5e-09 65.5 67 44.8
FvH4_4g02870 Fragaria vesca HOM05D001004 ORTHO05D000653 2.5e-09 65.5 72 48.6
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 3.3e-09 65.1 66 53.0
FAN12G4135 Fragaria x ananassa HOM05D001004 ORTHO05D000653 3.3e-09 65.1 71 47.9
Manes.05G086394 Manihot esculenta HOM05D001004 ORTHO05D000653 4.3e-09 64.7 66 43.9
GSVIVG01018137001 Vitis vinifera HOM05D001004 ORTHO05D000653 4.3e-09 64.7 72 47.2
Carub.0004s2089 Capsella rubella HOM05D001004 ORTHO05D000653 7.3e-09 63.9 72 44.4
CARHR181290 Cardamine hirsuta HOM05D001004 ORTHO05D000653 7.3e-09 63.9 72 48.6
BcaC02g07440 Brassica carinata HOM05D001004 ORTHO05D000653 9.6e-09 63.5 72 43.1
C04p66930 Brassica napus HOM05D001004 ORTHO05D000653 1.3e-08 63.2 66 45.5
BolC4t28194H Brassica oleracea HOM05D001004 ORTHO05D000653 1.3e-08 63.2 66 45.5
CiPaw.01G189500 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.3e-08 63.2 66 48.5
BraA04t18431Z Brassica rapa HOM05D001004 ORTHO05D000653 1.6e-08 62.8 66 47.0
HanXRQChr01g0014571 Helianthus annuus HOM05D001004 ORTHO05D000653 1.6e-08 62.8 64 48.4
SGA_v2.0_scaffold103G30002 Striga asiatica HOM05D001004 ORTHO05D000653 2.1e-08 62.4 64 43.8
GSVIVG01018142001 Vitis vinifera HOM05D001004 ORTHO05D000653 2.1e-08 62.4 68 47.1
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.8e-08 62.0 82 43.9
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 2.8e-08 62.0 66 48.5
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 2.8e-08 62.0 66 50.0
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 2.8e-08 62.0 66 45.5
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 2.8e-08 62.0 66 50.0
Sopen09g032440 Solanum pennellii HOM05D018538 ORTHO05D000653 2.8e-08 62.0 66 43.9
Manes.05G086336 Manihot esculenta HOM05D001004 ORTHO05D000653 3.6e-08 61.6 64 42.2
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 3.6e-08 61.6 66 50.0
BcaB01g03622 Brassica carinata HOM05D001004 ORTHO05D000653 4.8e-08 61.2 66 45.5
CARHR133600 Cardamine hirsuta HOM05D001004 ORTHO05D000653 4.8e-08 61.2 66 50.0
Lalb_Chr02g0150361 Lupinus albus HOM05D001004 ORTHO05D000653 4.8e-08 61.2 68 41.2
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 4.8e-08 61.2 72 45.8
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 4.8e-08 61.2 67 47.8
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 6.2e-08 60.8 66 43.9
Sed0019846 Sechium edule HOM05D001004 ORTHO05D000653 6.2e-08 60.8 66 50.0
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 6.2e-08 60.8 66 50.0
Haze_11313 Corylus avellana HOM05D001004 ORTHO05D000653 8.1e-08 60.5 68 50.0
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 8.1e-08 60.5 66 50.0
C03p25690 Brassica napus HOM05D001004 ORTHO05D000653 1.1e-07 60.1 66 43.9
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 1.4e-07 59.7 65 47.7
ClCG04G001650 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.4e-07 59.7 66 48.5
MELO3C031606.2 Cucumis melo HOM05D001004 ORTHO05D000653 1.4e-07 59.7 65 44.6
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 1.4e-07 59.7 66 48.5
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 1.4e-07 59.7 74 43.2
A04p29640 Brassica napus HOM05D001004 ORTHO05D000653 1.8e-07 59.3 66 42.4
BraA04t18430Z Brassica rapa HOM05D001004 ORTHO05D000653 1.8e-07 59.3 66 42.4
RcHm_v2.0_Chr4g0390891 Rosa chinensis HOM05D001004 ORTHO05D000653 1.8e-07 59.3 66 47.0
Carub.0004s2090 Capsella rubella HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 45.5
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.1e-07 58.5 72 44.4
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 45.5
COL.COLO4_12160 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.1e-07 58.5 73 46.6
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 47.0
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 50.0
MD13G1208500 Malus domestica HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 45.5
Psat4g107840 Pisum sativum HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 45.5
Prupe.1G032500 Prunus persica HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 47.0
RcHm_v2.0_Chr4g0390951 Rosa chinensis HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 48.5
SalBow6G4720 Salvia bowleyana HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 42.4
SalBow6G5314 Salvia bowleyana HOM05D001004 ORTHO05D000653 3.1e-07 58.5 67 44.8
Sed0000530 Sechium edule HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 50.0
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 3.1e-07 58.5 66 43.9
AL4G36210 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 4.0e-07 58.2 67 43.3
A04p14760 Brassica napus HOM05D001004 ORTHO05D000653 4.0e-07 58.2 68 45.6
Carub.0008s0506 Capsella rubella HOM05D001004 ORTHO05D000653 4.0e-07 58.2 66 50.0
ClCG07G000750 Citrullus lanatus HOM05D001004 ORTHO05D000653 4.0e-07 58.2 66 45.5
Glyma.20G205800 Glycine max HOM05D001004 ORTHO05D000653 4.0e-07 58.2 72 45.8
Prupe.1G032100 Prunus persica HOM05D001004 ORTHO05D000653 4.0e-07 58.2 75 41.3
AT2G38870 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 5.3e-07 57.8 65 46.2
BcaC02g08941 Brassica carinata HOM05D001004 ORTHO05D000653 5.3e-07 57.8 68 44.1
BolC4t26457H Brassica oleracea HOM05D001004 ORTHO05D000653 5.3e-07 57.8 68 44.1
Lalb_Chr21g0312251 Lupinus albus HOM05D001004 ORTHO05D000653 5.3e-07 57.8 66 42.4
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 5.3e-07 57.8 66 43.9
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 5.3e-07 57.8 71 43.7
Prupe.I000300 Prunus persica HOM05D001004 ORTHO05D000653 5.3e-07 57.8 66 42.4
SalBow6G7260 Salvia bowleyana HOM05D001004 ORTHO05D000653 5.3e-07 57.8 66 42.4
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 6.9e-07 57.4 66 45.5
MELO3C018349.2 Cucumis melo HOM05D001004 ORTHO05D000653 6.9e-07 57.4 65 43.1
CsaV3_5G013360 Cucumis sativus L. HOM05D001004 ORTHO05D000653 6.9e-07 57.4 65 43.1
HanXRQChr01g0014551 Helianthus annuus HOM05D001004 ORTHO05D000653 6.9e-07 57.4 66 43.9
Hma1.2p1_0650F.1_g195540 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 6.9e-07 57.4 54 55.6
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 6.9e-07 57.4 66 45.5
ClCG05G004510 Citrullus lanatus HOM05D001004 ORTHO05D000653 9.0e-07 57.0 66 45.5
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 9.0e-07 57.0 66 47.0
Prupe.I000200 Prunus persica HOM05D001004 ORTHO05D000653 9.0e-07 57.0 66 45.5
SalBow6G2951 Salvia bowleyana HOM05D001004 ORTHO05D000653 9.0e-07 57.0 67 44.8
Sed0002681 Sechium edule HOM05D001004 ORTHO05D000653 9.0e-07 57.0 66 45.5
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 9.0e-07 57.0 72 43.1
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 1.2e-06 56.6 66 47.0
Atru.chr4.2206 Acer truncatum HOM05D001004 ORTHO05D000653 1.5e-06 56.2 66 43.9
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.5e-06 56.2 66 43.9
COL.COLO4_12153 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.5e-06 56.2 67 44.8
HanXRQChr01g0007401 Helianthus annuus HOM05D001004 ORTHO05D000653 1.5e-06 56.2 64 43.8
HanXRQChr01g0014511 Helianthus annuus HOM05D001004 ORTHO05D000653 1.5e-06 56.2 66 47.0
Manes.05G086324 Manihot esculenta HOM05D001004 ORTHO05D000653 1.5e-06 56.2 67 41.8
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 1.5e-06 56.2 66 43.9
TPR.G6174 Trifolium pratense HOM05D001004 ORTHO05D000653 1.5e-06 56.2 66 43.9
BraA04t17113Z Brassica rapa HOM05D001004 ORTHO05D000653 2.0e-06 55.8 68 44.1
CSS0031008 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 2.0e-06 55.8 64 45.3
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 2.0e-06 55.8 66 43.9
HanXRQChr01g0007331 Helianthus annuus HOM05D001004 ORTHO05D000653 2.0e-06 55.8 64 43.8
HanXRQChr01g0014521 Helianthus annuus HOM05D001004 ORTHO05D000653 2.0e-06 55.8 66 43.9
Sed0016936 Sechium edule HOM05D001004 ORTHO05D000653 2.0e-06 55.8 65 43.1
EL10Ac5g10439 Beta vulgaris HOM05D001004 ORTHO05D000653 2.6e-06 55.5 65 44.6
HanXRQChr01g0007291 Helianthus annuus HOM05D001004 ORTHO05D000653 2.6e-06 55.5 68 44.1
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 2.6e-06 55.5 66 43.9
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.6e-06 55.5 85 36.5
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 2.6e-06 55.5 67 44.8
AUR62032226 Chenopodium quinoa HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 45.3
CsaV3_7G026940 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.4e-06 55.1 66 43.9
HanXRQChr01g0005421 Helianthus annuus HOM05D001004 ORTHO05D000653 3.4e-06 55.1 64 43.8
HanXRQChr01g0007351 Helianthus annuus HOM05D001004 ORTHO05D000653 3.4e-06 55.1 68 44.1
Hma1.2p1_0310F.1_g120870 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 3.4e-06 55.1 70 47.1
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 3.4e-06 55.1 66 43.9
arahy.Tifrunner.gnm1.ann1.T5EZBY Arachis hypogaea HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 40.9
EL10Ac8g18696 Beta vulgaris HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 37.9
Carub.0008s0505 Capsella rubella HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 47.0
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 43.9
ECA248G1252 Erigeron canadensis HOM05D001004 ORTHO05D000653 4.4e-06 54.7 64 42.2
FAN17G0323 Fragaria x ananassa HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 47.0
FAN17G0556 Fragaria x ananassa HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 47.0
FAN17G2832 Fragaria x ananassa HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 47.0
HanXRQChr01g0014541 Helianthus annuus HOM05D001004 ORTHO05D000653 4.4e-06 54.7 64 45.3
Lalb_Chr21g0312271 Lupinus albus HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 43.9
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 45.5
Sp2g08390 Schrenkiella parvula HOM05D001004 ORTHO05D000653 4.4e-06 54.7 66 45.5
CARHR180000 Cardamine hirsuta HOM05D001004 ORTHO05D000653 5.8e-06 54.3 66 45.5
Cfa008366 Carpinus fangiana HOM05D001004 ORTHO05D000653 5.8e-06 54.3 66 45.5
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 5.8e-06 54.3 68 42.6
Thhalv10003342m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 5.8e-06 54.3 70 44.3
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.8e-06 54.3 66 47.0
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.8e-06 54.3 65 46.2
HanXRQChr01g0005431 Helianthus annuus HOM05D001004 ORTHO05D000653 5.8e-06 54.3 64 43.8
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 5.8e-06 54.3 70 41.4
Prupe.8G228900 Prunus persica HOM05D001004 ORTHO05D000653 5.8e-06 54.3 66 43.9
MELO3C029118.2 Cucumis melo HOM05D001004 ORTHO05D000653 7.6e-06 53.9 62 41.9
DCAR_011990 Daucus carota HOM05D001004 ORTHO05D000653 7.6e-06 53.9 66 42.4
Medtr1g075340 Medicago truncatula HOM05D001004 ORTHO05D000653 7.6e-06 53.9 66 40.9
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 7.6e-06 53.9 66 40.9
ECA238G0152 Erigeron canadensis HOM05D001004 ORTHO05D000653 9.9e-06 53.5 66 42.4
Potri.010G075400 Populus trichocarpa HOM05D001004 ORTHO05D000653 9.9e-06 53.5 66 40.9
SalBow6G4960 Salvia bowleyana HOM05D001004 ORTHO05D000653 9.9e-06 53.5 66 45.5
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 9.9e-06 53.5 68 42.6


User provided reference genes

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