Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g083190.3 Solanum lycopersicum HOM05D007412 ORTHO05D009313 1.0e-125 453.4 217 100.0
Sopen09g032110 Solanum pennellii HOM05D007412 ORTHO05D009313 7.9e-123 443.7 217 98.6
PGSC0003DMG400006085 Solanum tuberosum HOM05D007412 ORTHO05D009313 1.5e-116 422.9 217 95.9
Peaxi162Scf01416g00013 Petunia axillaris HOM05D007412 ORTHO05D009313 1.3e-101 373.2 220 83.6
Nitab4.5_0010243g0010 Nicotiana tabacum HOM05D007412 ORTHO05D009313 3.2e-87 325.5 226 73.9
Oeu022316.1 Olea europaea HOM05D007412 ORTHO05D009313 6.2e-83 311.2 218 71.1
SalBow2G0207 Salvia bowleyana HOM05D007412 ORTHO05D009313 8.9e-82 307.4 188 78.7
Migut.G00414 Erythranthe guttata HOM05D007412 ORTHO05D009313 4.4e-81 305.1 222 66.7
Rhsim04G0195000 Rhododendron simsii HOM05D007412 ORTHO05D009313 7.5e-81 304.3 224 68.3
MSTRG.4087 Avicennia marina HOM05D007412 ORTHO05D009313 6.4e-80 301.2 224 67.0
Cc00_g20670 Coffea canephora HOM05D007412 ORTHO05D009313 1.4e-79 300.1 196 74.5
Sed0016634 Sechium edule HOM05D007412 ORTHO05D009313 5.4e-79 298.1 222 65.3
Lsat_1_v5_gn_3_124261 Lactuca sativa HOM05D007412 ORTHO05D009313 1.6e-78 296.6 202 69.3
Lj6A653T76 Lonicera japonica HOM05D007412 ORTHO05D009313 6.0e-78 294.7 184 73.4
CSS0011967 Camellia sinensis var. sinensis HOM05D007412 ORTHO05D009313 7.8e-78 294.3 198 70.7
CSS0029364 Camellia sinensis var. sinensis HOM05D007412 ORTHO05D009313 7.8e-78 294.3 198 70.7
CsaV3_3G012710 Cucumis sativus L. HOM05D007412 ORTHO05D009313 1.7e-77 293.1 221 67.0
GSVIVG01018092001 Vitis vinifera HOM05D007412 ORTHO05D009313 1.5e-76 290.0 164 81.7
EL10Ac6g14279 Beta vulgaris HOM05D007412 ORTHO05D009313 5.6e-76 288.1 222 62.6
Dinv14073 Davidia involucrata HOM05D007412 ORTHO05D009313 1.6e-75 286.6 224 68.3
MD11G1069500 Malus domestica HOM05D007412 ORTHO05D009313 2.1e-75 286.2 207 67.6
ECA240G0358 Erigeron canadensis HOM05D007412 ORTHO05D009313 2.8e-75 285.8 186 71.5
MELO3C006482.2 Cucumis melo HOM05D007412 ORTHO05D009313 3.6e-75 285.4 248 60.5
HanXRQChr03g0092521 Helianthus annuus HOM05D007412 ORTHO05D009313 3.6e-75 285.4 167 77.2
Thecc.04G243600 Theobroma cacao HOM05D007412 ORTHO05D009313 4.7e-75 285.0 214 64.5
FvH4_4g02220 Fragaria vesca HOM05D007412 ORTHO05D009313 8.1e-75 284.3 184 71.7
FAN12G2712 Fragaria x ananassa HOM05D007412 ORTHO05D009313 8.1e-75 284.3 184 71.7
Cpa.g.sc58.20 Carica papaya HOM05D007412 ORTHO05D009313 1.1e-74 283.9 211 63.5
Eucgr.H00220 Eucalyptus grandis HOM05D007412 ORTHO05D009313 1.1e-74 283.9 173 76.3
Duzib212G0542 Durio zibethinus HOM05D007412 ORTHO05D009313 5.2e-74 281.6 216 63.9
PSO210G6829 Papaver somniferum HOM05D007412 ORTHO05D009313 6.8e-74 281.2 168 74.4
unitig_747.g21682 Utricularia gibba HOM05D002547 ORTHO05D009313 6.8e-74 281.2 187 71.7
COL.COLO4_15765 Corchorus olitorius HOM05D007412 ORTHO05D009313 1.5e-73 280.0 166 77.1
FAN17G1959 Fragaria x ananassa HOM05D007412 ORTHO05D009313 1.5e-73 280.0 184 70.7
PSO832G2518 Papaver somniferum HOM05D007412 ORTHO05D009313 3.4e-73 278.9 168 73.8
vmacro08398 Vaccinium macrocarpon HOM05D007412 ORTHO05D009313 5.8e-73 278.1 227 62.6
Manes.15G035500 Manihot esculenta HOM05D007412 ORTHO05D009313 7.5e-73 277.7 177 71.2
Gorai.011G164700 Gossypium raimondii HOM05D007412 ORTHO05D009313 1.3e-72 276.9 164 75.6
Dinv44610 Davidia involucrata HOM05D007412 ORTHO05D009313 2.9e-72 275.8 171 77.8
Gohir.A10G118720 Gossypium hirsutum HOM05D007412 ORTHO05D009313 2.9e-72 275.8 164 75.0
RcHm_v2.0_Chr4g0389531 Rosa chinensis HOM05D007412 ORTHO05D009313 2.9e-72 275.8 173 74.6
Gohir.D10G147600 Gossypium hirsutum HOM05D007412 ORTHO05D009313 8.3e-72 274.2 164 75.0
Potri.010G078800 Populus trichocarpa HOM05D007412 ORTHO05D009313 1.1e-71 273.9 218 60.1
Lj6g0001594 Lotus japonicus HOM05D007412 ORTHO05D009313 1.9e-71 273.1 215 62.8
Prupe.1G026900 Prunus persica HOM05D007412 ORTHO05D009313 7.1e-71 271.2 217 62.7
PGR142G1781 Punica granatum HOM05D007412 ORTHO05D009313 9.2e-71 270.8 171 71.9
THA.LOC104826067 Tarenaya hassleriana HOM05D007412 ORTHO05D009313 1.2e-70 270.4 164 72.6
arahy.Tifrunner.gnm1.ann1.7ZK5QJ Arachis hypogaea HOM05D007412 ORTHO05D009313 1.6e-70 270.0 167 71.9
CANSAT78G1677 Cannabis sativa HOM05D007412 ORTHO05D009313 6.0e-70 268.1 165 71.5
Ca_12212_v3 Cicer arietinum L. HOM05D007412 ORTHO05D009313 6.0e-70 268.1 166 71.1
Medtr5g042420 Medicago truncatula HOM05D007412 ORTHO05D009313 6.0e-70 268.1 213 60.1
Glyma.10G000900 Glycine max HOM05D007412 ORTHO05D009313 1.3e-69 266.9 216 63.4
TAR362G0694 Trochodendron aralioides HOM05D007412 ORTHO05D009313 1.7e-69 266.5 213 62.0
VMungo0720G2555 Vigna mungo HOM05D007412 ORTHO05D009313 2.3e-69 266.2 212 63.7
arahy.Tifrunner.gnm1.ann1.VMTG6G Arachis hypogaea HOM05D007412 ORTHO05D009313 6.6e-69 264.6 168 71.4
Lalb_Chr01g0020811 Lupinus albus HOM05D007412 ORTHO05D009313 8.6e-69 264.2 215 62.3
Aqoxy5G00362 Aquilegia oxysepala HOM05D007412 ORTHO05D009313 1.5e-68 263.5 169 71.6
BcaB07g30560 Brassica carinata HOM05D007412 ORTHO05D009313 1.9e-68 263.1 219 58.4
Nn1g02544 Nelumbo nucifera HOM05D007412 ORTHO05D009313 3.3e-68 262.3 164 73.2
Phvul.007G280100 Phaseolus vulgaris HOM05D007412 ORTHO05D009313 1.2e-67 260.4 218 59.2
Sabra10G0064500 Salix brachista HOM05D007412 ORTHO05D009313 2.8e-67 259.2 218 58.3
QL06p015027 Quercus lobata HOM05D007412 ORTHO05D009313 6.2e-67 258.1 218 59.2
BcaC03g16594 Brassica carinata HOM05D007412 ORTHO05D009313 8.1e-67 257.7 219 57.5
C02p44160 Brassica napus HOM05D007412 ORTHO05D009313 8.1e-67 257.7 219 57.5
BolC2t10457H Brassica oleracea HOM05D007412 ORTHO05D009313 8.1e-67 257.7 219 57.5
CiPaw.01G192500 Carya illinoinensis HOM05D007412 ORTHO05D009313 8.1e-67 257.7 175 69.1
Sp2g08560 Schrenkiella parvula HOM05D007412 ORTHO05D009313 8.1e-67 257.7 218 57.3
BraA02t07833Z Brassica rapa HOM05D007412 ORTHO05D009313 1.4e-66 256.9 219 57.5
CARHR179730 Cardamine hirsuta HOM05D007412 ORTHO05D009313 1.4e-66 256.9 214 57.0
A02p27970 Brassica napus HOM05D007412 ORTHO05D009313 2.3e-66 256.1 219 57.5
Os01g0929100 Oryza sativa ssp. japonica HOM05D007412 ORTHO05D009313 2.0e-65 253.1 161 69.6
Psat6g102120 Pisum sativum HOM05D007412 ORTHO05D009313 2.0e-65 253.1 181 63.0
Thhalv10003269m.g Eutrema salsugineum HOM05D007412 ORTHO05D009313 4.4e-65 251.9 164 66.5
AL8G16510 Arabidopsis lyrata HOM05D007412 ORTHO05D009313 2.2e-64 249.6 181 63.5
AL37U10020 Arabidopsis lyrata HOM05D007412 ORTHO05D009313 4.9e-64 248.4 217 55.3
AT5G43750 Arabidopsis thaliana HOM05D007412 ORTHO05D009313 6.4e-64 248.1 183 62.8
Carub.0008s0489 Capsella rubella HOM05D007412 ORTHO05D009313 1.4e-63 246.9 164 67.1
ATR0665G092 Amborella trichopoda HOM05D007412 ORTHO05D009313 3.2e-63 245.7 213 54.5
Zm00001eb142440 Zea mays HOM05D007412 ORTHO05D009313 3.2e-63 245.7 181 64.1
DCAR_030707 Daucus carota HOM05D007412 ORTHO05D009313 2.1e-62 243.0 224 53.6
Ciclev10005847m.g Citrus clementina HOM05D007412 ORTHO05D009313 7.8e-62 241.1 216 56.5
Haze_11268 Corylus avellana HOM05D007412 ORTHO05D009313 7.3e-60 234.6 171 64.3
MBI11_g15916_MAGBIO Magnolia biondii HOM05D007412 ORTHO05D009313 2.8e-59 232.6 170 62.4
Ah.03g138430 Amaranthus hybridus HOM05D007412 ORTHO05D009313 1.8e-58 229.9 139 74.1
FAN22G2201 Fragaria x ananassa HOM05D007412 ORTHO05D009313 8.9e-58 227.6 284 45.1
CDE06G0695 Ceratophyllum demersum HOM05D007412 ORTHO05D009313 9.9e-57 224.2 169 59.8
Glyma.19G263800 Glycine max HOM05D007412 ORTHO05D009313 1.1e-55 220.7 128 78.1
Nitab4.5_0000525g0020 Nicotiana tabacum HOM05D007412 ORTHO05D009313 1.3e-51 207.2 119 85.7
AUR62002782 Chenopodium quinoa HOM05D007412 ORTHO05D009313 7.6e-49 198.0 103 85.4
AUR62014099 Chenopodium quinoa HOM05D007412 ORTHO05D009313 1.1e-47 194.1 103 84.5
Phvul.006G006300 Phaseolus vulgaris HOM05D007412 ORTHO05D009313 2.1e-46 189.9 217 49.3
Glyma.02G000300 Glycine max HOM05D007412 ORTHO05D009313 4.6e-46 188.7 109 79.8
SEGI_16394 Sequoiadendron giganteum HOM05D007412 ORTHO05D009313 1.6e-38 163.7 181 47.0
ClCG05G004710 Citrullus lanatus HOM05D000055 ORTHO05D000057 6.0e-38 161.8 210 46.2
TPR.G4008 Trifolium pratense HOM05D007412 ORTHO05D009313 7.4e-28 128.3 133 49.6
Hund25023 Selenicereus undatus HOM05D007412 ORTHO05D009313 1.6e-27 127.1 77 76.6
Actinidia40098 Actinidia chinensis HOM05D007412 ORTHO05D009313 4.1e-26 122.5 119 50.4
TWI73G0547 Tripterygium wilfordii HOM05D007412 ORTHO05D009313 1.7e-24 117.1 147 46.3
Pp3c21_10470 Physcomitrium patens HOM05D007412 ORTHO05D009313 1.6e-19 100.5 122 42.6
AagrBONN_evm.TU.Sc2ySwM_228.2018 Anthoceros agrestis HOM05D007412 ORTHO05D009313 2.0e-17 93.6 133 39.8
Aa31LG2G9890 Aethionema arabicum HOM05D007412 ORTHO05D009313 5.0e-16 89.0 120 38.3
SMO137G0197 Selaginella moellendorffii HOM05D007412 ORTHO05D009313 5.5e-15 85.5 131 38.2
Eucgr.F02062 Eucalyptus grandis HOM05D007412 ORTHO05D009313 3.6e-14 82.8 41 85.4


User provided reference genes

Program Settings