Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 8.3e-48 193.4 96 100.0
Sopen09g031600 Solanum pennellii HOM05D005136 ORTHO05D024799 8.6e-45 183.3 95 94.7
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.0e-29 133.3 97 72.2
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 1.2e-17 93.2 103 48.5
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 5.8e-17 90.9 98 50.0
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 8.3e-16 87.0 78 52.6
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.4e-09 64.7 72 45.8
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.4e-09 64.7 72 45.8
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 7.6e-09 63.9 72 44.4
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 9.9e-09 63.5 96 37.5
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.9e-09 63.5 85 40.0
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 1.3e-08 63.2 96 37.5
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.3e-08 63.2 96 37.5
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.3e-08 63.2 96 37.5
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 1.3e-08 63.2 72 43.1
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.3e-08 63.2 96 37.5
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.8e-08 61.6 72 41.7
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 3.8e-08 61.6 96 36.5
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 4.9e-08 61.2 72 41.7
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 8.4e-08 60.5 72 40.3
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 1.4e-07 59.7 72 41.7
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.4e-07 59.7 72 41.7
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 1.4e-07 59.7 72 41.7
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.9e-07 59.3 72 41.7
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 1.9e-07 59.3 72 41.7
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.9e-07 59.3 72 41.7
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.9e-07 59.3 69 42.0
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.9e-07 59.3 69 42.0
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 1.9e-07 59.3 72 41.7
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.9e-07 59.3 72 43.1
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 1.9e-07 59.3 72 43.1
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 2.4e-07 58.9 72 41.7
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 2.4e-07 58.9 72 41.7
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.4e-07 58.9 72 41.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 2.4e-07 58.9 72 41.7
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.4e-07 58.9 72 40.3
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 2.4e-07 58.9 72 40.3
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 40.3
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 40.3
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 40.3
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 40.3
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 38.9
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 40.3
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 40.3
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 38.9
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 3.2e-07 58.5 72 38.9
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 4.2e-07 58.2 72 38.9
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 4.2e-07 58.2 72 40.3
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 5.4e-07 57.8 72 41.7
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 5.4e-07 57.8 72 40.3
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 5.4e-07 57.8 86 36.0
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 5.4e-07 57.8 72 40.3
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 5.4e-07 57.8 72 41.7
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 5.4e-07 57.8 72 41.7
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 7.1e-07 57.4 72 41.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 7.1e-07 57.4 72 41.7
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 7.1e-07 57.4 72 41.7
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 7.1e-07 57.4 72 41.7
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 7.1e-07 57.4 72 38.9
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 9.3e-07 57.0 72 40.3
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 9.3e-07 57.0 72 40.3
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.3e-07 57.0 72 40.3
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.3e-07 57.0 72 40.3
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 9.3e-07 57.0 72 40.3
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 9.3e-07 57.0 72 38.9
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 40.3
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 43.1
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 38.9
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 38.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 41.7
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.2e-06 56.6 69 42.0
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 41.7
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 41.7
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 38.9
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.2e-06 56.6 72 40.3
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.6e-06 56.2 72 40.3
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 40.3
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 40.3
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 38.9
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 40.3
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 40.3
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 37.5
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 37.5
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 1.6e-06 56.2 72 40.3
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 2.1e-06 55.8 72 38.9
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.7e-06 55.5 72 40.3
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.7e-06 55.5 72 40.3
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 2.7e-06 55.5 72 38.9
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-06 55.1 72 41.7
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-06 55.1 72 41.7
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.5e-06 55.1 72 41.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 3.5e-06 55.1 72 38.9
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 3.5e-06 55.1 72 38.9
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.6e-06 54.7 69 40.6
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 4.6e-06 54.7 72 40.3
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 4.6e-06 54.7 72 40.3
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 4.6e-06 54.7 72 37.5
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 6.0e-06 54.3 72 37.5
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 6.0e-06 54.3 72 41.7
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 6.0e-06 54.3 72 38.9
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 6.0e-06 54.3 72 40.3
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 6.0e-06 54.3 69 40.6
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 6.0e-06 54.3 72 37.5
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 6.0e-06 54.3 72 38.9
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 6.0e-06 54.3 72 37.5
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 7.8e-06 53.9 72 43.1
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 7.8e-06 53.9 72 37.5
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 7.8e-06 53.9 72 37.5


User provided reference genes

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