Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.2e-31 139.0 63 100.0
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.2e-31 139.0 63 100.0
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 4.6e-31 137.1 63 98.4
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.3e-29 130.6 63 95.2
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.3e-29 130.6 63 95.2
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 4.5e-26 120.6 63 88.9
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 5.8e-26 120.2 65 84.6
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.2e-25 118.2 63 81.0
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 2.2e-25 118.2 63 87.3
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 4.9e-25 117.1 63 87.3
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.9e-24 115.2 62 85.5
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 2.5e-24 114.8 58 89.7
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.5e-24 114.8 58 89.7
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.5e-24 114.8 58 89.7
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 2.5e-24 114.8 58 89.7
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 2.5e-24 114.8 58 89.7
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 4.2e-24 114.0 63 81.0
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 4.2e-24 114.0 63 81.0
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 9.3e-24 112.8 63 82.5
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.2e-23 112.5 63 84.1
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.2e-23 112.5 63 82.5
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.2e-23 112.5 63 84.1
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 82.5
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 84.1
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.6e-23 112.1 55 89.1
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 2.1e-23 111.7 63 82.5
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.1e-23 111.7 63 82.5
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 2.7e-23 111.3 58 86.2
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.7e-23 111.3 54 92.6
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.7e-23 111.3 54 92.6
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 2.7e-23 111.3 61 83.6
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 82.5
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 6.0e-23 110.2 63 82.5
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 7.9e-23 109.8 59 84.7
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 79.4
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 1.0e-22 109.4 58 84.5
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 1.0e-22 109.4 61 82.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.0e-22 109.4 61 83.6
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 1.0e-22 109.4 62 83.9
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.8e-22 108.6 55 89.1
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.8e-22 108.6 68 73.5
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.8e-22 108.6 63 79.4
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.8e-22 108.6 63 81.0
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.8e-22 108.6 62 85.5
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 2.3e-22 108.2 63 81.0
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 81.0
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 3.0e-22 107.8 64 81.2
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 81.0
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.9e-22 107.5 63 82.5
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 5.1e-22 107.1 62 77.4
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 6.7e-22 106.7 61 80.3
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 81.0
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 81.0
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.1e-21 105.9 54 90.7
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.1e-21 105.9 54 87.0
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 1.5e-21 105.5 64 79.7
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.5e-21 105.5 62 79.0
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 1.9e-21 105.1 57 82.5
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.9e-21 105.1 62 77.4
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 2.5e-21 104.8 62 75.8
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 2.5e-21 104.8 65 78.5
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.5e-21 104.8 53 84.9
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 4.3e-21 104.0 61 82.0
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 4.3e-21 104.0 63 79.4
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 4.3e-21 104.0 60 75.0
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 4.3e-21 104.0 62 75.8
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 4.3e-21 104.0 63 79.4
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 5.7e-21 103.6 53 90.6
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 5.7e-21 103.6 60 80.0
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.7e-21 103.6 63 76.2
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 7.4e-21 103.2 60 80.0
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 7.4e-21 103.2 62 75.8
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 9.6e-21 102.8 64 78.1
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.6e-21 102.8 59 79.7
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.6e-21 102.8 63 74.6
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.6e-21 102.8 59 79.7
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.6e-21 102.8 63 74.6
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 9.6e-21 102.8 59 79.7
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 9.6e-21 102.8 63 74.6
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.3e-20 102.4 57 80.7
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.3e-20 102.4 57 80.7
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.3e-20 102.4 63 77.8
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.6e-20 102.1 55 81.8
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 2.1e-20 101.7 73 71.2
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 2.8e-20 101.3 63 76.2
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 4.8e-20 100.5 60 78.3
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 6.3e-20 100.1 59 78.0
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 6.3e-20 100.1 65 75.4
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 6.3e-20 100.1 63 73.0
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 6.3e-20 100.1 63 76.2
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 8.2e-20 99.8 59 79.7
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 8.2e-20 99.8 53 83.0
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 3.1e-19 97.8 59 78.0
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.1e-19 97.8 62 69.4
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.1e-19 97.8 62 69.4
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 4.1e-19 97.4 58 74.1
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 4.1e-19 97.4 62 67.7
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 9.0e-19 96.3 60 70.0
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.5e-18 95.5 53 79.2
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 2.0e-18 95.1 50 82.0
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 3.4e-18 94.4 55 78.2
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 4.5e-18 94.0 52 78.8
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 4.5e-18 94.0 59 74.6
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.0e-17 92.8 56 73.2
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.3e-17 92.4 59 72.9
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 1.3e-17 92.4 64 64.1
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 2.2e-17 91.7 60 71.7
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 1.1e-16 89.4 49 79.6
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.2e-16 87.4 59 71.2
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 4.2e-16 87.4 54 72.2
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 7.2e-16 86.7 66 66.7
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 7.2e-16 86.7 58 65.5
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.2e-16 86.7 56 66.1
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.2e-15 85.9 55 70.9
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 2.1e-15 85.1 62 69.4
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.1e-15 85.1 55 74.5
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 2.7e-15 84.7 53 71.7
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.6e-15 84.3 64 67.2
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 1.3e-14 82.4 53 73.6
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 2.3e-14 81.6 53 64.2
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.5e-13 79.0 54 66.7
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 4.3e-13 77.4 54 64.8
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 3.7e-12 74.3 58 60.3
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 4.1e-11 70.9 40 77.5
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 2.0e-10 68.6 34 88.2
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 1.9e-08 62.0 81 40.7
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.5e-08 61.6 50 60.0
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.1e-07 58.5 52 53.8
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 8.8e-06 53.1 44 56.8


User provided reference genes

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