Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.2e-111 406.8 239 100.0
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 1.4e-107 393.3 241 96.3
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.8e-99 366.3 240 87.9
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 8.0e-92 340.9 246 80.1
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 2.6e-82 309.3 245 73.9
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.8e-81 305.8 246 78.5
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.3e-81 304.7 242 76.4
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.8e-59 231.5 241 61.4
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 8.9e-59 231.1 238 60.1
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 2.6e-58 229.6 243 63.8
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 5.8e-58 228.4 237 59.9
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 9.9e-58 227.6 241 63.5
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 2.2e-57 226.5 241 58.9
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.9e-57 226.1 239 66.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.1e-56 224.2 238 58.4
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.9e-56 223.4 239 57.3
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 1.9e-56 223.4 237 56.1
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 2.4e-56 223.0 236 58.9
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 4.1e-56 222.2 245 60.4
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.1e-56 222.2 240 57.1
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 9.2e-56 221.1 236 55.5
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 9.2e-56 221.1 237 61.2
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.2e-55 220.7 230 58.3
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.6e-55 220.3 238 61.8
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 2.1e-55 219.9 256 54.3
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.7e-55 219.5 239 56.5
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.7e-55 219.5 239 55.6
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 3.5e-55 219.2 249 53.8
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 6.0e-55 218.4 242 55.8
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 7.8e-55 218.0 256 52.0
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.0e-54 217.6 231 64.1
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.3e-54 217.2 226 59.7
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.7e-54 216.9 246 55.7
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 3.0e-54 216.1 248 61.3
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.0e-54 216.1 237 58.6
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 3.9e-54 215.7 235 57.4
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 6.6e-54 214.9 244 59.0
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.1e-53 214.2 247 57.1
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.5e-53 213.8 225 64.0
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.5e-53 213.8 252 56.7
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.3e-53 212.6 238 55.5
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.3e-53 212.2 227 52.9
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.6e-53 211.8 238 54.6
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 9.5e-53 211.1 249 60.6
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 6.2e-52 208.4 239 55.2
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 1.1e-51 207.6 237 54.4
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.4e-51 207.2 247 53.4
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 1.8e-51 206.8 240 54.2
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.8e-51 206.8 248 60.1
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.4e-51 206.5 237 54.4
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 2.4e-51 206.5 243 53.1
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 3.1e-51 206.1 238 58.8
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 5.2e-51 205.3 237 54.4
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 6.8e-51 204.9 237 56.5
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 8.9e-51 204.5 229 50.2
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.2e-50 204.1 218 57.3
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.5e-50 203.8 227 55.9
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.5e-50 203.8 239 55.2
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.4e-50 202.2 241 53.1
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 9.9e-50 201.1 234 59.8
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 8.4e-49 198.0 227 56.4
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 3.2e-48 196.1 252 51.6
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.6e-47 193.7 247 51.4
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 3.5e-47 192.6 240 57.1
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.0e-46 191.0 247 50.6
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.3e-46 190.7 242 57.0
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 1.7e-46 190.3 240 56.7
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 5.1e-46 188.7 235 47.2
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 6.6e-46 188.3 226 58.4
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.5e-45 187.2 236 54.2
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 4.3e-45 185.7 264 49.2
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 9.6e-45 184.5 220 55.5
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 2.1e-44 183.3 223 53.4
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.6e-44 182.6 206 64.6
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.4e-43 180.6 254 49.2
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.8e-43 180.3 274 49.6
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 2.4e-43 179.9 235 57.9
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.5e-42 177.2 229 49.3
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.5e-42 177.2 164 65.2
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.6e-42 176.4 248 56.0
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 9.9e-42 174.5 230 46.1
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 4.9e-41 172.2 245 51.4
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 4.9e-41 172.2 222 52.7
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 8.4e-41 171.4 280 49.6
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 7.1e-40 168.3 237 51.9
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.0e-38 164.5 240 53.3
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.7e-38 163.7 258 42.6
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 5.1e-38 162.2 240 50.4
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 8.7e-38 161.4 244 51.2
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 8.7e-38 161.4 244 51.2
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 8.7e-38 161.4 196 56.6
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-37 161.0 244 48.8
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 1.5e-37 160.6 240 50.0
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 3.3e-37 159.5 221 43.9
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 4.3e-37 159.1 248 49.6
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 7.3e-37 158.3 220 50.9
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 8.1e-36 154.8 252 50.4
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 8.1e-36 154.8 226 54.0
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.8e-35 153.7 242 50.0
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.8e-35 153.7 169 49.7
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.3e-35 152.1 236 48.3
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.0e-34 150.2 241 50.6
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 4.5e-34 149.1 277 41.9
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 7.6e-34 148.3 251 49.8
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 9.9e-34 147.9 239 47.3
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 9.9e-34 147.9 241 46.1
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.1e-32 144.4 248 48.4
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 2.4e-32 143.3 251 43.0
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 5.4e-32 142.1 223 40.4
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 5.4e-32 142.1 246 44.7
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 2.7e-31 139.8 235 46.4
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 3.5e-31 139.4 234 46.2
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 3.5e-31 139.4 247 42.1
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 4.6e-31 139.0 241 45.2
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 6.0e-31 138.7 236 45.8
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 6.7e-30 135.2 276 42.8
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 1.5e-29 134.0 238 44.5
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 5.6e-29 132.1 164 51.8
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 9.6e-29 131.3 242 45.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.6e-28 130.6 194 52.6
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.8e-28 129.8 256 43.4
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 3.7e-28 129.4 249 44.2
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 8.1e-28 128.3 157 49.7
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 3.1e-27 126.3 253 43.5
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 3.1e-27 126.3 253 43.5
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 9.0e-27 124.8 255 43.1
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 9.0e-27 124.8 255 43.1
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.3e-25 120.9 256 41.0
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 2.2e-25 120.2 243 46.5
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 1.4e-24 117.5 274 37.6
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.4e-24 116.7 260 44.2
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.5e-23 112.8 266 40.6
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 7.9e-23 111.7 148 45.9
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.3e-22 110.2 154 46.1
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 5.1e-22 109.0 246 42.3
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 1.6e-20 104.0 242 36.8
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-19 101.3 155 41.9
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 9.0e-19 98.2 230 35.2
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.5e-18 95.9 92 51.1
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.5e-16 90.1 92 50.0
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 8.7e-14 81.6 88 58.0
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.1e-13 81.3 151 35.8
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 7.2e-08 62.0 135 33.3
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 2.7e-07 60.1 147 31.3
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 6.1e-07 58.9 145 33.8
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 7.9e-07 58.5 143 34.3
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.0e-06 58.2 135 34.8
MSTRG.7055 Avicennia marina HOM05D003370 ORTHO05D003848 1.4e-06 57.8 150 34.0
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.4e-06 57.8 146 33.6
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 2.3e-06 57.0 143 33.6
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 3.0e-06 56.6 145 33.8
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 8.8e-06 55.1 142 28.9
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 8.8e-06 55.1 143 32.2
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 8.8e-06 55.1 141 31.2


User provided reference genes

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