Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 4.3e-42 174.1 80 100.0
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 4.3e-42 174.1 80 100.0
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 9.0e-40 166.4 80 96.2
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 4.3e-34 147.5 80 85.0
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 4.8e-33 144.1 80 82.5
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 9.0e-32 139.8 80 80.0
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 1.4e-21 105.9 80 62.5
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 1.4e-21 105.9 80 62.5
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 3.2e-21 104.8 80 65.0
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 7.9e-20 100.1 77 64.9
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 1.0e-19 99.8 80 62.5
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.4e-19 99.4 80 58.8
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.4e-19 99.4 84 59.5
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 1.8e-19 99.0 80 61.2
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 2.3e-19 98.6 80 62.5
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 8.8e-19 96.7 80 61.2
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 2.6e-18 95.1 80 60.0
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 4.4e-18 94.4 80 56.2
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 4.4e-18 94.4 77 59.7
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 7.4e-18 93.6 77 59.7
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 7.4e-18 93.6 80 57.5
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 7.4e-18 93.6 80 58.8
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 7.4e-18 93.6 77 62.3
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 9.7e-18 93.2 80 60.0
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 1.7e-17 92.4 78 60.3
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 1.7e-17 92.4 76 61.8
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 3.7e-17 91.3 80 55.0
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 4.8e-17 90.9 80 55.0
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 4.8e-17 90.9 80 55.0
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 6.3e-17 90.5 79 60.8
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 1.1e-16 89.7 80 55.0
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 1.1e-16 89.7 80 58.8
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 1.4e-16 89.4 77 59.7
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 1.8e-16 89.0 78 55.1
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 2.4e-16 88.6 78 55.1
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 3.1e-16 88.2 81 55.6
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 3.1e-16 88.2 77 62.3
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 4.1e-16 87.8 80 52.5
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 4.1e-16 87.8 83 57.8
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 5.3e-16 87.4 80 51.2
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 7.0e-16 87.0 78 57.7
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 9.1e-16 86.7 77 57.1
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 1.2e-15 86.3 80 51.2
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 1.2e-15 86.3 77 58.4
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 2.6e-15 85.1 79 53.2
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 5.9e-15 84.0 80 60.0
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 5.9e-15 84.0 80 60.0
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 5.9e-15 84.0 78 56.4
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 7.7e-15 83.6 81 56.8
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 7.7e-15 83.6 80 48.8
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 7.7e-15 83.6 80 48.8
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 1.0e-14 83.2 78 57.7
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 1.0e-14 83.2 77 55.8
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.0e-14 83.2 80 52.5
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 2.2e-14 82.0 87 51.7
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.2e-14 82.0 77 55.8
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 2.2e-14 82.0 77 55.8
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.9e-14 81.6 77 55.8
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 3.8e-14 81.3 80 56.2
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 3.8e-14 81.3 80 56.2
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 1.1e-13 79.7 78 56.4
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 1.1e-13 79.7 78 55.1
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 1.9e-13 79.0 80 47.5
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 1.9e-13 79.0 80 48.8
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 2.5e-13 78.6 79 50.6
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 5.5e-13 77.4 78 55.1
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 7.2e-13 77.0 78 55.1
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 9.4e-13 76.6 78 56.4
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 9.4e-13 76.6 78 56.4
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 9.4e-13 76.6 80 46.2
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 1.6e-12 75.9 78 53.8
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 1.6e-12 75.9 78 55.1
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 2.1e-12 75.5 78 55.1
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 6.1e-12 73.9 78 53.8
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 8.0e-12 73.6 73 53.4
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 8.0e-12 73.6 73 54.8
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 6.7e-11 70.5 86 45.3
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 8.8e-11 70.1 78 52.6
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 1.1e-10 69.7 84 46.4
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 4.4e-10 67.8 82 42.7
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 9.7e-10 66.6 80 45.0
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 2.8e-09 65.1 71 49.3


User provided reference genes

Program Settings