Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.4e-130 469.5 230 100.0
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.3e-128 463.0 230 98.7
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.0e-128 461.8 230 97.8
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.1e-122 443.4 230 93.9
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 6.7e-120 434.1 230 92.6
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.4e-117 426.4 232 90.5
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.5e-116 421.4 232 90.1
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.4e-114 416.4 232 87.1
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 3.2e-106 388.7 232 84.5
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.5e-100 368.2 233 78.1
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.2e-99 365.9 233 77.3
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.9e-98 362.8 234 76.5
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.9e-98 362.8 233 76.4
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 5.5e-98 361.3 224 78.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 5.5e-98 361.3 224 78.6
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.2e-97 360.1 233 77.7
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.2e-97 360.1 233 76.8
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.6e-97 359.8 224 78.6
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.7e-97 358.2 177 97.2
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 7.9e-97 357.5 232 75.9
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.0e-96 357.1 233 76.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 5.1e-96 354.8 233 75.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 8.8e-96 354.0 255 70.6
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.0e-95 352.8 239 74.9
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 4.4e-95 351.7 233 76.0
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 9.7e-95 350.5 233 75.1
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.7e-94 349.7 233 73.8
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.7e-94 349.7 224 75.9
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 2.2e-94 349.4 210 81.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.2e-94 349.4 233 75.5
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.7e-94 348.6 224 76.8
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 6.3e-94 347.8 234 74.8
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.1e-93 347.1 233 74.2
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.4e-93 346.7 224 75.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.8e-93 346.3 224 75.9
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.4e-93 345.9 224 74.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.4e-93 345.9 224 77.7
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 3.1e-93 345.5 228 74.6
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 3.1e-93 345.5 232 72.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 7.0e-93 344.4 234 73.9
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 9.1e-93 344.0 237 73.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.2e-92 343.6 235 72.8
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-92 343.2 224 74.6
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-92 343.2 224 74.6
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.0e-92 342.8 233 73.0
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.6e-92 342.4 232 71.6
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.6e-92 342.4 224 74.6
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 3.5e-92 342.0 232 73.7
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 3.5e-92 342.0 234 73.5
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 4.5e-92 341.7 233 73.4
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 4.5e-92 341.7 224 75.4
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 5.9e-92 341.3 232 74.6
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 5.9e-92 341.3 227 73.1
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.7e-92 340.9 234 73.5
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 7.7e-92 340.9 233 72.1
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.0e-91 340.5 233 72.1
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.3e-91 340.1 233 72.1
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 2.2e-91 339.3 231 70.1
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 2.2e-91 339.3 232 73.7
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.9e-91 339.0 234 73.9
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.9e-91 339.0 234 73.9
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.9e-91 339.0 224 74.6
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.8e-91 338.6 218 75.7
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.0e-91 338.2 233 72.5
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 5.0e-91 338.2 223 76.2
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 8.5e-91 337.4 220 74.5
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.1e-90 337.0 232 70.3
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.1e-90 337.0 223 75.8
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.4e-90 336.7 242 71.5
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 3.2e-90 335.5 220 74.5
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.2e-90 335.1 232 69.8
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.2e-90 335.1 224 72.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 8.0e-89 330.9 220 74.5
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 8.0e-89 330.9 226 71.2
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 8.0e-89 330.9 277 62.5
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 8.0e-89 330.9 224 73.2
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.4e-88 330.1 216 73.6
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.8e-88 329.7 213 76.1
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.9e-88 328.6 248 66.9
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.9e-88 328.6 249 67.9
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.9e-88 328.6 226 73.0
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.2e-88 328.2 235 73.2
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.2e-88 328.2 235 73.2
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 5.2e-88 328.2 213 75.1
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.1e-87 327.0 226 73.0
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.6e-87 325.9 234 73.1
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.6e-87 325.9 211 75.4
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 9.7e-87 323.9 232 68.1
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.8e-85 319.7 233 69.5
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.8e-85 319.7 233 69.5
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.8e-85 319.7 224 71.0
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 4.1e-85 318.5 224 71.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 9.1e-85 317.4 232 65.9
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.7e-83 313.2 232 66.4
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 5.0e-83 311.6 215 70.2
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 6.5e-83 311.2 220 69.5
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 8.5e-83 310.8 215 69.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 8.5e-83 310.8 215 70.2
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.1e-82 310.5 215 69.8
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.5e-82 310.1 226 68.1
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 2.5e-82 309.3 218 68.8
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.5e-82 309.3 235 67.7
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 4.2e-82 308.5 220 69.1
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 4.2e-82 308.5 220 69.1
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 7.2e-82 307.8 229 65.1
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.6e-81 306.6 242 65.7
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.6e-81 306.6 231 65.8
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.1e-81 306.2 226 67.3
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.7e-81 305.8 215 67.4
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.7e-81 305.8 211 73.0
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 3.6e-81 305.4 215 67.4
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.6e-81 305.4 225 67.1
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 6.1e-81 304.7 215 68.4
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 6.1e-81 304.7 215 68.4
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.0e-80 303.9 224 65.6
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.0e-80 303.9 215 68.4
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.0e-80 303.9 227 68.7
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.0e-80 302.0 220 67.3
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.5e-79 300.1 213 68.5
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.6e-79 299.3 233 67.4
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 2.2e-78 296.2 237 65.8
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 5.3e-77 291.6 158 90.5
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 4.5e-76 288.5 248 62.5
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.3e-75 287.0 239 65.7
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 7.2e-74 281.2 181 74.6
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.0e-72 275.8 213 67.1
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-68 263.1 177 71.8
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.5e-66 256.9 215 57.2
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.6e-65 252.3 233 60.1
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.3e-64 249.6 221 61.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.0e-64 249.2 212 59.0
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.3e-62 243.8 161 75.2
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.4e-61 240.4 193 65.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 3.5e-60 235.7 157 70.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 2.3e-56 223.0 158 72.2
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 7.5e-55 218.0 225 51.1
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.6e-52 210.3 216 51.4
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.1e-49 199.9 235 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.7e-49 198.7 215 50.7
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.4e-48 197.2 144 70.1
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.8e-48 196.8 185 57.8
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 6.0e-44 181.8 120 73.3
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.8e-41 172.9 168 54.2
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 8.1e-41 171.4 124 65.3
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 3.0e-35 152.9 99 71.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.3e-34 149.1 213 39.0
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 2.1e-33 146.7 90 78.9
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.4e-32 143.3 225 39.1
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-31 141.0 156 50.0
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 4.4e-31 139.0 150 51.3
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 8.4e-30 134.8 74 90.5
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.6e-28 130.6 90 68.9
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.7e-27 127.1 66 92.4
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 3.3e-26 122.9 103 62.1
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 2.4e-24 116.7 89 62.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 7.6e-23 111.7 192 32.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.7e-22 110.5 80 68.8
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.7e-19 100.5 127 41.7
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-17 94.0 73 64.4
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.8e-17 93.2 53 84.9
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.6e-17 92.8 75 61.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 6.2e-17 92.0 73 63.0
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.2e-17 92.0 75 61.3
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 4.9e-14 82.4 231 29.4
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.7e-12 76.6 60 63.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-11 74.3 48 70.8
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 3.9e-11 72.8 138 37.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 5.1e-11 72.4 52 69.2
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 1.8e-08 63.9 40 70.0
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.0e-07 60.5 54 63.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.6e-07 58.5 32 84.4


User provided reference genes

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