Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 8.0e-98 360.5 197 100.0
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 1.7e-95 352.8 197 98.0
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 1.7e-95 352.8 197 98.5
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.7e-87 326.2 197 86.3
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 3.0e-84 315.5 184 87.5
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 3.9e-84 315.1 194 80.9
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.6e-82 309.7 197 79.7
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 4.3e-75 285.0 200 73.5
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 8.1e-74 280.8 198 71.2
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 1.1e-73 280.4 198 72.2
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.8e-73 279.6 198 75.3
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 2.4e-73 279.3 198 70.7
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 4.0e-73 278.5 199 71.4
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 6.8e-73 277.7 197 73.6
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.0e-72 276.2 198 73.2
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 2.0e-72 276.2 198 71.2
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 2.6e-72 275.8 198 73.7
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 3.4e-72 275.4 200 72.0
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 3.4e-72 275.4 202 69.8
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 5.8e-72 274.6 199 70.9
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 7.6e-72 274.2 197 71.6
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 1.3e-71 273.5 199 72.4
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.3e-71 273.5 196 73.5
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 1.3e-71 273.5 195 73.3
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 2.2e-71 272.7 199 70.4
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 2.2e-71 272.7 193 73.1
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 2.9e-71 272.3 197 72.1
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 3.8e-71 271.9 198 70.7
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 3.8e-71 271.9 196 73.0
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 8.4e-71 270.8 199 69.8
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 1.1e-70 270.4 198 68.7
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 4.2e-70 268.5 201 71.6
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 7.1e-70 267.7 199 68.8
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 7.1e-70 267.7 199 69.3
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 7.1e-70 267.7 199 69.8
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 9.3e-70 267.3 198 70.2
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 1.2e-69 266.9 199 68.8
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 1.2e-69 266.9 199 68.8
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 1.6e-69 266.5 196 68.9
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 2.1e-69 266.2 200 67.5
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 2.7e-69 265.8 200 67.0
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 2.7e-69 265.8 199 68.3
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 3.5e-69 265.4 197 70.6
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 3.5e-69 265.4 200 69.0
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 1.0e-68 263.8 200 67.0
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.3e-68 263.5 193 70.5
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.7e-68 263.1 198 69.7
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 3.9e-68 261.9 197 68.0
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 1.1e-67 260.4 196 70.9
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 1.1e-67 260.4 200 66.0
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 2.5e-67 259.2 202 66.3
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 9.6e-67 257.3 200 69.0
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 1.3e-66 256.9 199 66.8
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 2.1e-66 256.1 198 67.2
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 2.1e-66 256.1 198 67.2
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 2.8e-66 255.8 204 65.7
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 2.8e-66 255.8 232 60.3
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 2.8e-66 255.8 203 64.5
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 2.8e-66 255.8 203 64.5
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 2.8e-66 255.8 196 66.8
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 6.2e-66 254.6 202 66.3
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 1.4e-65 253.4 197 66.0
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 1.4e-65 253.4 197 66.0
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.4e-65 253.4 199 65.3
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 1.4e-65 253.4 186 72.6
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 1.8e-65 253.1 197 66.0
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 2.4e-65 252.7 197 64.5
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 4.0e-65 251.9 197 65.0
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 4.0e-65 251.9 197 65.5
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 4.0e-65 251.9 197 66.0
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 4.0e-65 251.9 197 66.0
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 6.9e-65 251.1 197 65.5
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 9.0e-65 250.8 197 64.0
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 1.2e-64 250.4 195 66.2
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 2.6e-64 249.2 197 65.0
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 3.4e-64 248.8 198 65.2
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 9.9e-64 247.3 197 66.0
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 2.9e-63 245.7 197 65.0
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 4.9e-63 245.0 197 64.0
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.1e-62 243.8 199 64.3
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.4e-62 243.4 197 62.4
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 1.6e-61 240.0 197 63.5
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 2.7e-61 239.2 197 62.9
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 3.5e-61 238.8 234 55.6
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 7.8e-61 237.7 185 64.3
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 6.6e-60 234.6 199 63.3
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.1e-59 233.8 201 62.2
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 1.5e-59 233.4 196 63.8
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 3.3e-59 232.3 201 61.7
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 2.1e-58 229.6 201 61.2
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 4.8e-58 228.4 199 61.3
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 1.2e-56 223.8 190 62.1
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 1.2e-56 223.8 196 60.7
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 2.6e-56 222.6 197 62.4
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 9.9e-56 220.7 197 61.9
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 8.4e-55 217.6 282 46.5
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 4.6e-53 211.8 195 59.5
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 4.6e-53 211.8 196 58.7
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 7.9e-53 211.1 195 59.0
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 1.3e-52 210.3 159 69.2
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 2.3e-52 209.5 195 57.9
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 6.7e-52 208.0 188 58.5
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 1.1e-51 207.2 196 57.7
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 5.6e-51 204.9 193 56.0
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 5.3e-49 198.4 193 54.9
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.1e-42 176.4 152 61.2
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 1.3e-36 157.1 188 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 1.3e-34 150.6 188 43.6
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 7.9e-29 131.3 120 59.2
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 2.0e-27 126.7 120 58.3
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 2.8e-26 122.9 188 38.8
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 3.8e-23 112.5 118 54.2
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 5.1e-20 102.1 125 50.4
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.0e-15 87.8 54 70.4
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.7e-15 87.0 55 78.2
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.1e-13 80.1 77 51.9
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 3.9e-12 75.9 197 28.9
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 1.8e-09 67.0 201 32.8
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 9.1e-09 64.7 35 80.0
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 7.2e-06 55.1 70 50.0


User provided reference genes

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