Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 4.4e-233 810.8 386 100.0
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 2.1e-227 792.0 386 96.9
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 2.9e-224 781.6 386 95.9
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.1e-207 726.5 387 88.6
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 3.4e-193 678.3 387 84.0
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 9.9e-185 650.2 360 84.2
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 6.3e-163 577.8 385 71.7
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 5.9e-161 571.2 393 68.7
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 1.9e-159 566.2 388 69.8
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 3.9e-157 558.5 387 68.0
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 3.9e-157 558.5 385 68.6
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 8.8e-157 557.4 389 68.1
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 2.6e-156 555.8 390 67.7
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 4.4e-156 555.1 387 67.4
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.1e-154 550.4 371 69.8
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 1.1e-154 550.4 415 63.9
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 3.1e-154 548.9 394 66.0
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 6.9e-154 547.7 372 70.2
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 6.9e-154 547.7 390 67.9
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 3.4e-153 545.4 371 69.8
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 4.5e-153 545.0 394 65.5
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 5.9e-153 544.7 385 68.1
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 1.0e-152 543.9 394 66.0
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 2.9e-152 542.3 386 68.4
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 2.9e-152 542.3 383 66.3
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 2.9e-152 542.3 383 66.3
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 3.8e-152 542.0 387 67.4
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 5.0e-152 541.6 398 64.8
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 6.5e-152 541.2 385 67.8
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 1.1e-151 540.4 371 69.0
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 1.1e-151 540.4 372 69.9
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 1.4e-151 540.0 390 66.7
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 7.2e-151 537.7 392 65.6
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.2e-150 537.0 392 66.3
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 3.6e-150 535.4 439 59.9
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 4.7e-150 535.0 392 65.3
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 2.3e-149 532.7 394 65.2
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 6.7e-149 531.2 393 66.7
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 6.7e-149 531.2 394 64.7
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 8.8e-149 530.8 393 65.1
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 8.8e-149 530.8 388 65.5
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 5.7e-148 528.1 385 64.9
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 7.4e-148 527.7 392 65.8
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 9.7e-148 527.3 395 63.5
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 3.7e-147 525.4 391 64.5
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 4.8e-147 525.0 394 64.7
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 8.2e-147 524.2 388 63.7
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 1.4e-146 523.5 397 62.5
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.0e-145 519.6 391 64.5
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 1.7e-144 516.5 391 62.4
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 5.0e-144 515.0 393 64.9
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 8.5e-144 514.2 368 67.1
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 1.1e-143 513.8 393 64.1
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.9e-143 513.1 394 64.5
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 1.2e-142 510.4 422 59.2
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 2.1e-142 509.6 391 62.7
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 3.6e-142 508.8 373 65.4
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 6.7e-141 504.6 341 70.4
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 1.5e-140 503.4 394 62.2
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 2.0e-140 503.1 390 61.5
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 7.5e-140 501.1 395 62.3
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.7e-139 500.0 387 63.0
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 6.3e-139 498.0 379 64.9
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 6.3e-139 498.0 402 63.2
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 1.4e-138 496.9 346 67.6
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 2.4e-138 496.1 375 64.0
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 7.0e-138 494.6 387 63.3
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 1.6e-137 493.4 308 73.1
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 2.0e-137 493.0 389 62.2
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.7e-136 490.0 389 62.5
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 2.5e-135 486.1 386 61.9
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 3.2e-135 485.7 388 60.6
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 4.2e-135 485.3 390 62.6
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 1.6e-134 483.4 388 60.8
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 4.7e-134 481.9 422 59.0
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 2.3e-133 479.6 384 60.2
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 3.4e-132 475.7 374 63.9
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 9.8e-132 474.2 420 58.6
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.7e-131 473.4 393 60.8
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 3.7e-131 472.2 394 59.1
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 4.8e-131 471.9 385 60.5
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 1.1e-130 470.7 397 58.2
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 3.1e-130 469.2 390 60.5
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 1.7e-128 463.4 388 59.0
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 5.0e-128 461.8 373 62.7
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 1.1e-127 460.7 391 61.1
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.5e-127 460.3 369 61.0
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 2.1e-126 456.4 408 56.1
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 4.7e-126 455.3 389 58.4
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 1.8e-125 453.4 388 58.5
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 1.5e-124 450.3 390 58.2
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 2.0e-124 449.9 385 57.9
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 4.4e-124 448.7 387 58.4
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 2.2e-123 446.4 388 57.0
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 2.2e-123 446.4 388 57.2
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 3.7e-123 445.7 388 57.0
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 3.7e-123 445.7 389 57.1
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 3.7e-123 445.7 427 55.0
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.4e-122 443.7 371 58.8
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 5.4e-122 441.8 389 56.6
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 1.2e-121 440.7 396 56.8
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 2.5e-119 433.0 387 55.3
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.4e-117 427.2 385 56.4
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 2.0e-116 423.3 403 53.3
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 4.1e-114 415.6 343 61.2
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 1.0e-112 411.0 302 64.2
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 1.1e-103 380.9 266 68.8
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 8.6e-96 354.8 278 61.9
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 1.9e-95 353.6 233 70.8
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 7.1e-90 335.1 379 45.6
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 3.9e-88 329.3 376 46.8
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 8.7e-88 328.2 346 50.0
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 3.3e-87 326.2 377 46.2
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 1.6e-81 307.4 276 54.0
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.0e-77 292.7 229 61.1
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 8.4e-75 285.0 299 48.2
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 7.9e-73 278.5 200 67.5
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 2.0e-68 263.8 173 72.3
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 2.4e-66 256.9 302 47.0
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 3.2e-66 256.5 203 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 3.4e-60 236.5 233 50.2
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 1.3e-51 208.0 371 36.1
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 1.2e-49 201.4 189 54.0
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 6.7e-48 195.7 152 61.8
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 7.2e-42 175.6 378 32.5
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 1.0e-40 171.8 118 72.0
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 4.8e-38 162.9 365 31.2
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 4.5e-36 156.4 123 64.2
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 2.0e-31 141.0 148 47.3
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 4.4e-31 139.8 177 42.4
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 4.8e-22 109.8 171 39.2
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-12 78.2 159 31.4
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-10 68.9 69 43.5
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.6e-09 68.2 70 51.4
Cfa026191 Carpinus fangiana HOM05D005667 ORTHO05D124936 4.4e-07 60.1 227 23.8


User provided reference genes

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