Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 4.7e-106 387.9 199 100.0
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 3.1e-105 385.2 199 99.0
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 6.0e-93 344.4 204 87.7
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.9e-79 298.9 204 79.9
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 2.1e-77 292.7 202 74.8
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 3.5e-77 292.0 200 76.0
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 2.1e-74 282.7 199 74.4
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 2.3e-60 236.1 196 62.2
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 9.7e-59 230.7 202 59.9
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.5e-56 223.4 196 57.7
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 5.0e-55 218.4 166 62.0
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.2e-54 215.7 159 61.6
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 4.2e-54 215.3 179 58.1
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 2.7e-53 212.6 171 57.9
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 3.0e-52 209.1 185 55.1
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 7.4e-51 204.5 201 53.2
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.7e-50 203.4 194 53.1
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 2.8e-50 202.6 153 60.1
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 8.2e-50 201.1 167 58.7
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.1e-49 199.1 185 55.1
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 3.1e-49 199.1 138 65.2
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 1.6e-48 196.8 156 57.7
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 1.6e-48 196.8 188 52.7
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 3.5e-48 195.7 190 52.6
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.5e-48 195.3 195 51.8
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.0e-47 194.1 194 51.5
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.0e-47 194.1 199 50.8
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.0e-47 194.1 166 54.2
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.0e-47 194.1 177 52.5
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-47 193.7 164 57.3
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.3e-47 193.7 163 54.0
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 1.3e-47 193.7 194 51.5
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 1.3e-47 193.7 200 54.0
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.7e-47 193.4 153 60.8
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.2e-47 193.0 153 57.5
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 3.8e-47 192.2 183 54.1
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.8e-47 192.2 183 54.1
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 6.5e-47 191.4 157 59.2
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.5e-46 190.3 160 56.2
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.9e-46 189.9 195 53.8
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 3.2e-46 189.1 194 50.5
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.2e-46 188.7 190 48.9
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 4.2e-46 188.7 199 51.3
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 5.5e-46 188.3 197 51.3
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 9.4e-46 187.6 197 52.8
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 9.4e-46 187.6 194 50.5
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 1.2e-45 187.2 126 65.9
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.2e-45 187.2 194 50.0
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.1e-45 186.4 183 53.0
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 3.6e-45 185.7 196 52.6
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 3.6e-45 185.7 196 52.6
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.7e-45 185.3 176 51.7
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 3.0e-44 182.6 198 50.0
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 3.0e-44 182.6 195 49.2
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 6.7e-44 181.4 165 53.3
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 1.5e-43 180.3 160 53.1
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 2.0e-43 179.9 171 49.7
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 2.6e-43 179.5 139 58.3
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 5.7e-43 178.3 159 52.8
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 9.7e-43 177.6 158 54.4
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 9.7e-43 177.6 194 47.4
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 2.2e-42 176.4 193 46.1
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 2.8e-42 176.0 168 52.4
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 3.7e-42 175.6 149 54.4
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.8e-42 175.3 156 51.3
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.1e-41 174.1 169 47.9
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.8e-41 173.3 183 47.5
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.8e-41 173.3 183 47.5
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.8e-41 173.3 165 50.3
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 2.4e-41 172.9 177 50.3
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 2.4e-41 172.9 161 52.2
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 1.2e-40 170.6 162 50.0
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.2e-40 170.6 196 44.9
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 2.0e-40 169.9 162 48.1
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 4.5e-40 168.7 204 46.6
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 1.7e-39 166.8 190 48.4
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.2e-39 166.4 185 47.0
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 5.0e-39 165.2 159 49.1
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 5.5e-38 161.8 185 46.5
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 9.4e-38 161.0 190 45.3
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.2e-37 160.6 185 45.9
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 2.1e-37 159.8 168 48.2
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 2.7e-37 159.5 144 51.4
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 8.0e-37 157.9 142 50.0
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 8.0e-37 157.9 184 47.8
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 2.3e-36 156.4 156 48.1
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 3.0e-36 156.0 204 42.6
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 5.2e-36 155.2 156 47.4
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 6.8e-36 154.8 156 48.1
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 8.8e-36 154.5 185 44.3
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 2.0e-35 153.3 158 46.8
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 4.4e-35 152.1 191 46.1
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 1.3e-34 150.6 103 63.1
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 1.7e-34 150.2 166 45.8
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 1.7e-34 150.2 157 46.5
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.2e-34 149.8 150 47.3
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.8e-34 149.4 159 47.2
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.8e-34 149.4 157 45.9
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 3.7e-34 149.1 191 41.9
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 3.7e-34 149.1 162 44.4
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 1.4e-33 147.1 156 47.4
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.4e-33 147.1 154 47.4
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 1.4e-33 147.1 156 46.2
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 9.1e-33 144.4 163 42.9
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 1.6e-32 143.7 189 39.7
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 3.5e-32 142.5 192 40.6
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.0e-31 141.0 192 40.1
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.7e-31 140.2 189 38.6
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.7e-31 140.2 153 44.4
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 3.8e-31 139.0 184 40.8
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 5.0e-31 138.7 151 44.4
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 6.5e-31 138.3 190 39.5
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.5e-31 137.9 150 44.7
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 1.5e-30 137.1 144 46.5
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.9e-30 136.7 191 42.4
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 2.5e-30 136.3 191 40.3
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 4.2e-30 135.6 173 41.6
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 4.2e-30 135.6 173 41.6
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 5.5e-30 135.2 174 40.8
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 5.5e-30 135.2 151 45.7
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 5.5e-30 135.2 152 46.7
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.2e-29 134.0 161 40.4
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 2.1e-29 133.3 151 43.7
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.6e-29 132.5 158 42.4
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 8.0e-29 131.3 144 43.8
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 1.4e-28 130.6 164 40.2
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 2.3e-28 129.8 145 42.1
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 3.0e-28 129.4 176 42.0
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 8.8e-28 127.9 110 53.6
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 8.8e-28 127.9 176 42.0
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.2e-27 127.5 176 41.5
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.5e-27 127.1 197 36.5
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.5e-27 127.1 197 36.0
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 2.0e-27 126.7 177 41.2
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 5.7e-27 125.2 181 41.4
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 7.5e-27 124.8 118 50.0
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 9.8e-27 124.4 156 41.0
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 1.6e-24 117.1 166 39.2
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 7.8e-24 114.8 191 37.7
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 5.0e-23 112.1 152 41.4
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 8.6e-23 111.3 121 47.9
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 4.3e-22 109.0 111 47.7
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 4.7e-21 105.5 173 37.6
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 1.0e-20 104.4 170 36.5
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.0e-20 102.8 198 37.9
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.5e-19 100.5 150 37.3
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 1.3e-18 97.4 102 45.1
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.1e-17 94.4 186 34.4
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.1e-17 94.4 186 34.9
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.4e-17 94.0 173 32.9
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.8e-17 93.6 160 38.8
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 3.2e-17 92.8 152 34.2
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.4e-17 92.0 128 35.9
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 6.6e-15 85.1 193 30.6
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 4.3e-14 82.4 158 36.1
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 1.2e-13 80.9 108 43.5
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.4e-12 77.4 145 32.4
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.2e-12 75.5 121 33.9
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.2e-11 74.3 152 30.3
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 1.2e-11 74.3 153 34.6
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 4.4e-11 72.4 154 32.5
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.7e-10 70.5 151 27.2
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 4.1e-09 65.9 158 32.3
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 4.1e-09 65.9 185 33.5
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 4.1e-09 65.9 158 32.3
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 5.4e-09 65.5 109 38.5
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 7.0e-09 65.1 132 31.1
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.0e-07 61.2 120 30.0
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 3.0e-07 59.7 152 29.6


User provided reference genes

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