Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 6.2e-258 893.6 463 100.0
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 7.9e-237 823.5 434 98.4
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.3e-231 806.2 435 96.8
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 6.7e-220 767.3 435 90.8
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.2e-215 752.3 442 88.7
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 8.5e-207 723.8 437 87.0
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 9.4e-206 720.3 500 78.4
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 1.5e-182 643.3 433 74.1
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 5.2e-180 634.8 440 73.2
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 2.6e-179 632.5 431 74.2
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 3.4e-179 632.1 430 74.0
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 2.4e-177 625.9 440 71.8
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 4.1e-177 625.2 439 72.2
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 5.9e-176 621.3 447 70.7
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 2.5e-174 615.9 430 73.5
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 5.6e-174 614.8 437 70.9
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 9.5e-174 614.0 422 72.0
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 3.6e-173 612.1 429 71.6
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 8.0e-173 610.9 423 72.6
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 1.0e-172 610.5 432 71.1
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 1.0e-172 610.5 424 71.5
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 3.0e-172 609.0 424 72.2
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 8.9e-172 607.4 433 71.8
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 8.9e-172 607.4 428 70.3
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.6e-171 605.9 431 70.8
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 2.6e-171 605.9 424 71.2
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 7.5e-171 604.4 429 71.3
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 9.8e-171 604.0 437 70.5
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 3.7e-170 602.1 441 68.0
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 4.9e-170 601.7 429 71.1
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 8.3e-170 600.9 435 70.6
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 8.3e-170 600.9 427 70.5
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.8e-169 599.7 425 71.5
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 5.4e-169 598.2 408 72.3
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 7.0e-169 597.8 424 70.8
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 7.0e-169 597.8 440 68.6
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 9.2e-169 597.4 412 71.1
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.2e-168 597.0 441 67.6
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 2.7e-168 595.9 414 72.5
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 2.7e-168 595.9 411 70.6
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 4.6e-168 595.1 425 71.5
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 1.3e-167 593.6 423 70.9
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 2.3e-167 592.8 410 71.2
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 2.3e-167 592.8 406 70.9
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.3e-167 592.8 414 72.0
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.0e-167 592.4 414 72.2
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 8.6e-167 590.9 440 68.2
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 1.5e-166 590.1 390 74.9
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 1.9e-166 589.7 413 70.2
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 2.5e-166 589.3 437 68.2
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 3.3e-166 589.0 394 75.6
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 3.3e-166 589.0 424 69.1
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 7.3e-166 587.8 535 60.6
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 7.3e-166 587.8 409 71.1
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.2e-165 587.0 410 70.0
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.6e-165 586.6 411 70.3
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 2.8e-165 585.9 427 68.4
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 1.0e-164 583.9 439 66.3
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 1.4e-164 583.6 412 71.6
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 1.8e-164 583.2 423 70.0
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 6.8e-164 581.3 448 66.3
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.0e-163 579.7 432 68.1
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 7.5e-163 577.8 433 67.7
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 2.9e-162 575.9 414 69.3
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 3.7e-162 575.5 412 69.9
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 4.9e-162 575.1 411 69.6
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 4.9e-162 575.1 442 66.7
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 6.4e-162 574.7 432 69.2
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 6.4e-162 574.7 419 68.0
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 1.2e-160 570.5 451 65.9
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 6.0e-160 568.2 430 66.5
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 1.1e-158 563.9 413 68.0
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 4.3e-158 562.0 422 67.1
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 9.5e-158 560.8 411 68.1
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 1.2e-157 560.5 425 67.1
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 2.1e-157 559.7 439 65.4
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 4.0e-156 555.4 395 69.1
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 5.2e-156 555.1 429 64.8
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 1.4e-153 547.0 402 67.7
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 1.9e-153 546.6 415 66.7
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 5.4e-153 545.0 385 69.4
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 2.1e-152 543.1 425 66.1
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 3.9e-151 538.9 411 65.7
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 2.5e-150 536.2 401 67.3
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 4.4e-147 525.4 407 65.6
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 4.4e-147 525.4 407 65.6
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 9.9e-147 524.2 364 72.0
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.7e-146 522.3 382 69.4
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 1.9e-145 520.0 359 71.9
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 1.0e-143 514.2 374 66.8
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 3.3e-142 509.2 398 63.6
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 7.3e-142 508.1 409 62.1
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.1e-136 490.0 365 69.6
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 2.2e-130 469.9 393 60.8
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 3.9e-127 459.1 323 71.2
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 4.0e-124 449.1 391 58.8
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.5e-123 447.2 425 59.3
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 7.6e-123 444.9 411 58.9
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 1.0e-119 434.5 329 66.0
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 3.9e-119 432.6 318 70.1
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.5e-110 403.3 299 65.6
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 5.3e-108 395.6 393 54.5
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 8.5e-106 388.3 316 67.1
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 2.7e-96 356.7 383 50.7
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 6.7e-95 352.1 252 71.0
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.1e-89 334.7 336 57.4
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 5.7e-86 322.4 227 75.3
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 8.2e-85 318.5 225 75.6
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.4e-76 291.2 407 45.0
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 8.5e-74 282.0 218 62.4
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 3.6e-64 250.0 383 39.7
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 5.4e-52 209.5 139 73.4
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.6e-48 198.0 120 79.2
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.7e-45 186.8 123 74.0
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 8.3e-45 185.7 111 80.2
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.2e-44 182.2 123 72.4
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.7e-42 177.9 123 70.7
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 1.3e-34 151.8 103 68.9
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 6.6e-34 149.4 107 70.1
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 6.6e-34 149.4 107 70.1
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.9e-33 147.9 102 76.5
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 5.6e-25 119.8 68 79.4
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.6e-24 118.2 100 58.0
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 5.2e-23 113.2 78 65.4
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 9.0e-23 112.5 68 76.5
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 4.4e-22 110.2 128 52.3
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 2.4e-20 104.4 130 50.8
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 4.6e-19 100.1 74 63.5
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 3.0e-18 97.4 49 87.8
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 6.6e-18 96.3 236 37.7
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 5.3e-15 86.7 51 80.4
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 7.1e-12 76.3 41 75.6
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 6.0e-11 73.2 59 64.4


User provided reference genes

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