Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g074840.4 Solanum lycopersicum HOM05D007164 ORTHO05D008802 5.3e-279 963.8 502 100.0
Sopen09g029680 Solanum pennellii HOM05D007164 ORTHO05D008802 1.1e-247 859.8 467 97.0
PGSC0003DMG401011367 Solanum tuberosum HOM05D007164 ORTHO05D008802 1.9e-204 716.1 518 76.3
Nitab4.5_0009457g0020 Nicotiana tabacum HOM05D007164 ORTHO05D008802 3.1e-186 655.6 507 71.4
Nitab4.5_0005474g0060 Nicotiana tabacum HOM05D000498 ORTHO05D000354 9.6e-180 634.0 484 72.5
Peaxi162Scf00067g02422 Petunia axillaris HOM05D007164 ORTHO05D008802 3.7e-163 578.9 413 75.8
Dinv33025 Davidia involucrata HOM05D007164 ORTHO05D008802 1.9e-50 204.5 470 35.1
Actinidia24839 Actinidia chinensis HOM05D007164 ORTHO05D008802 9.6e-47 192.2 465 34.6
Lj2A1189G41 Lonicera japonica HOM05D007164 ORTHO05D008802 9.3e-42 175.6 403 35.7
Oeu047456.1 Olea europaea HOM05D007164 ORTHO05D008802 1.3e-35 155.2 385 34.5
ECA247G0548 Erigeron canadensis HOM05D002562 ORTHO05D002808 3.8e-35 153.7 460 32.2
Rhsim01G0283000 Rhododendron simsii HOM05D007164 ORTHO05D008802 2.1e-33 147.9 464 31.5
Oeu047459.1 Olea europaea HOM05D007164 ORTHO05D008802 1.1e-31 142.1 456 32.0
HanXRQChr10g0283971 Helianthus annuus HOM05D007164 ORTHO05D008802 2.5e-31 141.0 492 29.9
Cc11_g02370 Coffea canephora HOM05D007164 ORTHO05D008802 7.7e-28 129.4 485 30.1
Atru.chr5.1222 Acer truncatum HOM05D007164 ORTHO05D008802 3.2e-26 124.0 286 34.6
Migut.D00187 Erythranthe guttata HOM05D007164 ORTHO05D008802 7.2e-26 122.9 404 32.9
Potri.002G208058 Populus trichocarpa HOM05D007164 ORTHO05D008802 7.2e-26 122.9 459 30.1
SalBow3G2762 Salvia bowleyana HOM05D007164 ORTHO05D008802 9.4e-26 122.5 448 30.1
Haze_04871 Corylus avellana HOM05D007164 ORTHO05D008802 2.3e-24 117.9 301 33.6
QL12p030187 Quercus lobata HOM05D007164 ORTHO05D008802 3.9e-24 117.1 474 30.6
GSVIVG01010946001 Vitis vinifera HOM05D007164 ORTHO05D008802 3.9e-24 117.1 275 31.6
Duzib138G1086 Durio zibethinus HOM05D007164 ORTHO05D008802 6.7e-24 116.3 489 27.8
MSTRG.21615 Avicennia marina HOM05D007164 ORTHO05D008802 2.6e-23 114.4 408 31.6
Eucgr.K03454 Eucalyptus grandis HOM05D007164 ORTHO05D008802 2.2e-22 111.3 463 27.6
vmacro14990 Vaccinium macrocarpon HOM05D007164 ORTHO05D008802 4.8e-22 110.2 299 33.1
TWI23G0507 Tripterygium wilfordii HOM05D007164 ORTHO05D008802 1.1e-21 109.0 341 32.0
DCAR_005809 Daucus carota HOM05D007164 ORTHO05D008802 1.4e-21 108.6 435 29.9
MD03G1283300 Malus domestica HOM05D007164 ORTHO05D008802 3.1e-21 107.5 335 31.0
Gorai.004G088600 Gossypium raimondii HOM05D007164 ORTHO05D008802 5.3e-21 106.7 473 29.2
Ciclev10017702m.g Citrus clementina HOM05D007164 ORTHO05D008802 1.2e-20 105.5 273 34.1
SGA_v2.0_scaffold2G01414 Striga asiatica HOM05D007164 ORTHO05D008802 1.2e-20 105.5 336 30.7
Sabra02G0151300 Salix brachista HOM05D007164 ORTHO05D008802 5.9e-20 103.2 457 28.7
Sabra02G0151900 Salix brachista HOM05D007164 ORTHO05D008802 7.7e-20 102.8 482 28.4
Prupe.8G256400 Prunus persica HOM05D007164 ORTHO05D008802 1.3e-19 102.1 316 32.6
Thecc.01G295000 Theobroma cacao HOM05D007164 ORTHO05D008802 1.3e-19 102.1 477 29.4
FAN20G2954 Fragaria x ananassa HOM05D007164 ORTHO05D008802 2.9e-19 100.9 385 28.3
Manes.01G216000 Manihot esculenta HOM05D007164 ORTHO05D008802 2.9e-19 100.9 468 27.6
TAR636G2054 Trochodendron aralioides HOM05D007164 ORTHO05D008802 8.5e-19 99.4 467 25.9
COL.COLO4_23399 Corchorus olitorius HOM05D007164 ORTHO05D008802 7.2e-18 96.3 461 27.5
CiPaw.07G104500 Carya illinoinensis HOM05D007164 ORTHO05D008802 1.2e-17 95.5 183 35.5
THA.LOC104825977 Tarenaya hassleriana HOM05D007164 ORTHO05D008802 4.7e-17 93.6 465 26.5
Gohir.A08G075000 Gossypium hirsutum HOM05D007164 ORTHO05D008802 2.3e-16 91.3 293 30.7
Ah.15g093880 Amaranthus hybridus HOM05D007164 ORTHO05D008802 3.0e-16 90.9 198 35.4
Gohir.D08G084100 Gossypium hirsutum HOM05D007164 ORTHO05D008802 3.0e-16 90.9 475 28.4
FAN24G2541 Fragaria x ananassa HOM05D007164 ORTHO05D008802 8.8e-16 89.4 375 27.5
RcHm_v2.0_Chr6g0293271 Rosa chinensis HOM05D007164 ORTHO05D008802 1.1e-15 89.0 370 28.6
Aqoxy2G03039 Aquilegia oxysepala HOM05D007164 ORTHO05D008802 1.5e-15 88.6 353 28.9
FAN27G1449 Fragaria x ananassa HOM05D007164 ORTHO05D008802 2.6e-15 87.8 373 27.9
Lsat_1_v5_gn_9_3101 Lactuca sativa HOM05D007164 ORTHO05D008802 4.4e-15 87.0 172 38.4
FvH4_2g25160 Fragaria vesca HOM05D007164 ORTHO05D008802 9.7e-15 85.9 361 28.3
AUR62033184 Chenopodium quinoa HOM05D007164 ORTHO05D008802 1.3e-14 85.5 195 35.4
ClCG05G010410 Citrullus lanatus HOM05D007164 ORTHO05D008802 4.1e-13 80.5 301 29.6
MBI16_g23765_MAGBIO Magnolia biondii HOM05D007164 ORTHO05D008802 5.3e-13 80.1 291 29.9
Hund18121 Selenicereus undatus HOM05D007164 ORTHO05D008802 1.2e-12 79.0 219 32.0
Sed0021441 Sechium edule HOM05D007164 ORTHO05D008802 1.6e-12 78.6 339 28.0
unitig_0.g652 Utricularia gibba HOM05D007164 ORTHO05D008802 1.6e-12 78.6 190 34.7
MELO3C019559.2 Cucumis melo HOM05D007164 ORTHO05D008802 2.0e-12 78.2 259 30.5
CSS0046769 Camellia sinensis var. sinensis HOM05D007164 ORTHO05D008802 2.6e-12 77.8 319 27.0
TPR.G27420 Trifolium pratense HOM05D007164 ORTHO05D008802 2.6e-12 77.8 277 30.3
Psat5g105520 Pisum sativum HOM05D007164 ORTHO05D008802 7.7e-12 76.3 302 29.1
Cpa.g.sc9.198 Carica papaya HOM05D007164 ORTHO05D008802 1.0e-11 75.9 470 27.7
AUR62008594 Chenopodium quinoa HOM05D007164 ORTHO05D008802 3.8e-11 73.9 511 24.1
ATR0053G018 Amborella trichopoda HOM05D007164 ORTHO05D008802 5.0e-11 73.6 286 28.7
CANSAT25G0358 Cannabis sativa HOM05D007164 ORTHO05D008802 1.1e-10 72.4 446 28.5
CsaV3_3G018070 Cucumis sativus L. HOM05D007164 ORTHO05D008802 1.9e-10 71.6 296 28.4
Medtr3g082270 Medicago truncatula HOM05D007164 ORTHO05D008802 2.5e-10 71.2 171 32.7
Sc17g0003330 Simmondsia chinensis HOM05D007164 ORTHO05D008802 2.5e-10 71.2 172 36.6
Glyma.13G007800 Glycine max HOM05D007164 ORTHO05D008802 1.2e-09 68.9 230 27.0
Lj6g0003922 Lotus japonicus HOM05D007164 ORTHO05D008802 1.2e-09 68.9 306 27.1
arahy.Tifrunner.gnm1.ann1.PB1NMW Arachis hypogaea HOM05D007164 ORTHO05D008802 2.7e-09 67.8 322 25.5
Carub.0001s0209 Capsella rubella HOM05D007164 ORTHO05D008802 3.6e-09 67.4 464 24.6
arahy.Tifrunner.gnm1.ann1.JK4YNR Arachis hypogaea HOM05D007164 ORTHO05D008802 6.1e-09 66.6 459 24.0
Lalb_Chr18g0047211 Lupinus albus HOM05D007164 ORTHO05D008802 6.1e-09 66.6 220 30.0
arahy.Tifrunner.gnm1.ann1.94G738 Arachis hypogaea HOM05D007164 ORTHO05D008802 2.3e-08 64.7 192 30.2
HPP92_027362 Vanilla planifolia HOM05D007164 ORTHO05D008802 8.8e-08 62.8 83 47.0
Zm00001eb252420 Zea mays HOM05D007164 ORTHO05D008802 3.4e-07 60.8 163 29.4
AL1G12400 Arabidopsis lyrata HOM05D007164 ORTHO05D008802 4.4e-07 60.5 452 24.3
BcaC07g36981 Brassica carinata HOM05D007164 ORTHO05D008802 1.3e-06 58.9 140 32.1
C08p00350 Brassica napus HOM05D007164 ORTHO05D008802 1.3e-06 58.9 140 32.1
PGR044G2041 Punica granatum HOM05D007164 ORTHO05D008802 2.2e-06 58.2 122 36.1
BraA08t35648Z Brassica rapa HOM05D007164 ORTHO05D008802 6.3e-06 56.6 140 32.1
Thhalv10007546m.g Eutrema salsugineum HOM05D007164 ORTHO05D008802 8.3e-06 56.2 457 24.7


User provided reference genes

Program Settings