Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 4.6e-39 164.1 83 100.0
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 4.6e-39 164.1 83 100.0
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 4.8e-36 154.1 83 95.2
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 5.5e-32 140.6 81 84.0
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 2.9e-25 118.2 82 72.0
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 1.5e-24 115.9 81 67.9
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 1.5e-24 115.9 81 69.1
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 1.9e-24 115.5 81 70.4
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 3.2e-24 114.8 81 67.9
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 7.2e-24 113.6 79 70.9
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 9.4e-24 113.2 80 67.5
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 9.4e-24 113.2 81 67.9
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 1.6e-23 112.5 82 69.5
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 2.7e-23 111.7 81 70.4
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 8.0e-23 110.2 80 66.2
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 1.0e-22 109.8 81 66.7
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 1.4e-22 109.4 80 66.2
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 1.8e-22 109.0 80 66.2
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 1.8e-22 109.0 80 66.2
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 1.8e-22 109.0 80 66.2
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 2.3e-22 108.6 80 65.0
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 2.3e-22 108.6 80 63.8
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 3.0e-22 108.2 79 64.6
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 4.0e-22 107.8 80 66.2
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 5.2e-22 107.5 80 63.8
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 5.2e-22 107.5 80 62.5
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 5.2e-22 107.5 83 60.2
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 6.7e-22 107.1 81 60.5
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 8.8e-22 106.7 72 68.1
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 1.1e-21 106.3 80 65.0
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 1.5e-21 105.9 78 64.1
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 2.0e-21 105.5 80 66.2
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 2.6e-21 105.1 79 60.8
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 2.6e-21 105.1 80 62.5
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 2.6e-21 105.1 70 71.4
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 4.4e-21 104.4 72 66.7
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 5.7e-21 104.0 72 68.1
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 7.5e-21 103.6 77 63.6
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 9.7e-21 103.2 75 65.3
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 9.7e-21 103.2 74 67.6
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 9.7e-21 103.2 64 75.0
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 9.7e-21 103.2 76 69.7
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 1.7e-20 102.4 83 62.7
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 2.2e-20 102.1 75 64.0
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 2.2e-20 102.1 80 66.2
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 4.8e-20 100.9 80 58.8
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 6.3e-20 100.5 77 59.7
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 6.3e-20 100.5 77 61.0
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 8.2e-20 100.1 83 59.0
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 8.2e-20 100.1 80 66.2
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 1.4e-19 99.4 80 57.5
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 1.8e-19 99.0 80 66.2
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 2.4e-19 98.6 79 62.0
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 4.1e-19 97.8 79 57.0
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 4.1e-19 97.8 70 70.0
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 5.3e-19 97.4 73 64.4
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 9.1e-19 96.7 79 62.0
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 1.2e-18 96.3 78 55.1
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 1.2e-18 96.3 78 55.1
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 1.6e-18 95.9 80 65.0
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 2.0e-18 95.5 81 61.7
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 4.5e-18 94.4 78 53.8
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 4.5e-18 94.4 78 53.8
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 5.9e-18 94.0 79 54.4
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 1.0e-17 93.2 78 52.6
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 1.3e-17 92.8 74 60.8
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 1.7e-17 92.4 78 52.6
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 2.2e-17 92.0 78 52.6
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 2.2e-17 92.0 78 51.3
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 2.9e-17 91.7 69 63.8
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 3.8e-17 91.3 61 67.2
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 3.8e-17 91.3 77 53.2
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 8.5e-17 90.1 79 54.4
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 8.5e-17 90.1 78 51.3
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 1.1e-16 89.7 110 44.5
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 1.9e-16 89.0 66 62.1
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 1.9e-16 89.0 62 69.4
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 5.5e-16 87.4 78 51.3
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 9.4e-16 86.7 65 64.6
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 1.6e-15 85.9 76 56.6
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 1.6e-15 85.9 62 66.1
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 4.7e-15 84.3 65 66.2
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 1.8e-14 82.4 66 56.1
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 1.8e-14 82.4 66 56.1
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 1.8e-14 82.4 55 69.1
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 1.8e-14 82.4 78 53.8
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 2.3e-14 82.0 51 74.5
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 3.0e-14 81.6 61 65.6
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 6.8e-14 80.5 50 78.0
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 8.8e-14 80.1 68 52.9
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 8.8e-14 80.1 68 52.9
Lsat_1_v5_gn_0_9401 Lactuca sativa HOM05D007654 ORTHO05D009697 4.8e-12 74.3 57 59.6
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 6.3e-12 73.9 62 54.8
FAN20G1580 Fragaria x ananassa HOM05D007654 ORTHO05D009697 8.3e-12 73.6 64 60.9
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 1.1e-11 73.2 62 54.8
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 1.1e-11 73.2 57 59.6
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 9.1e-11 70.1 49 67.3
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 2.9e-09 65.1 52 51.9
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 6.5e-09 63.9 46 60.9
AagrBONN_evm.TU.Sc2ySwM_344.4968 Anthoceros agrestis HOM05D007654 ORTHO05D009697 1.2e-07 59.7 47 53.2
Mapoly0101s0010 Marchantia polymorpha HOM05D007654 ORTHO05D009697 4.0e-06 54.7 54 51.9


User provided reference genes

Program Settings