Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 0.0e+00 1253.8 585 100.0
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1223.8 631 92.1
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1155.2 631 86.8
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 3.4e-301 1037.7 614 78.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 4.4e-301 1037.3 658 74.8
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 7.5e-301 1036.6 565 87.6
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 2.7e-298 1028.1 637 74.1
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 1.3e-297 1025.8 637 75.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 5.5e-296 1020.4 627 75.8
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.0e-294 1016.1 636 74.8
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 3.0e-294 1014.6 623 75.6
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 2.6e-293 1011.5 629 74.7
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 4.4e-293 1010.7 619 76.3
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 7.5e-293 1010.0 624 74.5
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 3.1e-291 1004.6 631 74.5
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 4.1e-291 1004.2 633 75.5
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 5.4e-291 1003.8 633 72.8
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 9.2e-291 1003.0 615 75.6
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 1.6e-290 1002.3 647 73.4
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 1.6e-290 1002.3 626 75.2
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 4.5e-290 1000.7 611 75.3
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 5.9e-290 1000.3 609 76.2
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 2.3e-289 998.4 624 74.0
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.9e-289 998.0 610 76.1
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 5.0e-289 997.3 609 74.9
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.1e-288 996.1 609 76.5
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.5e-288 995.7 611 75.0
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.5e-288 995.7 625 74.4
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 2.5e-288 995.0 623 74.0
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 3.3e-288 994.6 626 72.8
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.3e-288 994.2 609 76.4
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 9.5e-288 993.0 632 74.5
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 1.2e-287 992.6 633 73.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.2e-287 992.6 563 84.4
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 3.6e-287 991.1 626 73.3
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.0e-286 987.6 618 74.1
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 5.2e-286 987.3 618 74.1
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 6.8e-286 986.9 625 73.9
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.2e-285 986.1 625 73.3
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 2.6e-285 984.9 622 73.3
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 3.4e-285 984.6 634 72.4
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 4.4e-285 984.2 624 73.4
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 5.7e-285 983.8 622 72.7
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.7e-284 982.2 619 73.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.7e-284 982.2 628 72.9
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.7e-284 982.2 601 74.9
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 3.7e-284 981.1 630 73.2
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 8.3e-284 979.9 624 72.9
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 1.8e-283 978.8 628 72.8
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 3.2e-283 978.0 601 75.0
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.2e-282 976.1 624 73.1
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.7e-281 972.2 639 71.5
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 1.8e-278 962.2 615 73.2
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 6.8e-278 960.3 653 68.9
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 3.4e-277 958.0 595 75.0
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 4.4e-277 957.6 612 73.7
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.7e-276 954.5 628 70.9
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.1e-275 953.0 596 74.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 2.4e-275 951.8 610 72.3
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 7.0e-275 950.3 610 72.1
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 1.0e-273 946.4 609 71.4
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 2.3e-273 945.3 609 72.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 5.0e-273 944.1 626 70.1
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 6.6e-273 943.7 609 71.3
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 6.6e-273 943.7 609 71.3
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 6.6e-273 943.7 609 71.3
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.9e-272 942.2 598 73.4
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.3e-272 941.4 637 69.2
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 7.3e-272 940.3 627 70.3
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 7.3e-272 940.3 630 70.3
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.4e-270 936.0 625 70.7
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.8e-270 935.6 637 69.1
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 4.0e-270 934.5 771 60.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 5.2e-270 934.1 629 70.0
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 2.0e-269 932.2 595 72.1
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 7.5e-269 930.2 822 56.6
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.4e-267 926.0 623 68.9
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.4e-267 924.1 727 62.4
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 3.9e-265 917.9 610 70.3
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.1e-264 916.4 632 69.8
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.1e-264 916.4 623 68.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.1e-263 912.1 672 64.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.5e-261 906.0 568 78.3
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.1e-254 883.2 640 67.2
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.0e-253 879.0 660 65.0
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 7.6e-253 877.1 655 65.2
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.7e-252 875.9 588 70.7
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.9e-251 872.5 556 73.4
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 3.3e-248 861.7 561 73.1
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 5.6e-248 860.9 591 69.0
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.7e-242 842.0 522 75.3
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.5e-240 836.3 532 74.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.9e-240 835.9 541 73.0
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 3.1e-238 828.6 583 68.4
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.2e-236 822.4 529 74.3
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.4e-235 819.7 555 69.9
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.8e-230 802.7 631 62.4
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.6e-226 789.6 641 61.2
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 8.8e-217 757.3 466 73.8
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 4.1e-214 748.4 609 58.8
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 8.5e-212 740.7 623 56.5
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.7e-204 716.5 603 56.9
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.6e-194 683.3 605 54.5
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 5.2e-193 678.3 434 72.1
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 9.1e-190 667.5 491 64.8
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 2.1e-186 656.4 381 77.2
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 6.5e-180 634.8 554 56.0
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 6.1e-178 628.2 427 70.7
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.2e-162 577.4 410 67.1
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 7.6e-144 515.0 352 71.3
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 3.8e-143 512.7 418 60.8
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.8e-129 467.2 246 82.5
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 5.5e-110 402.5 409 52.1
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.5e-91 341.3 202 77.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.9e-86 324.3 188 76.1
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 3.2e-86 323.6 263 63.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 6.6e-63 246.1 120 96.7
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 4.0e-60 236.9 130 81.5
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 3.7e-58 230.3 122 82.8
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 9.8e-51 205.7 155 61.9
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 3.0e-47 194.1 151 62.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.9e-46 191.4 259 41.3
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.9e-46 191.4 160 53.1
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 9.2e-41 172.6 121 62.8
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.8e-36 158.3 102 75.5
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.3e-31 142.1 87 71.3
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-28 132.1 87 69.0
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-28 132.1 87 69.0
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 2.0e-27 128.3 65 86.2
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.3e-25 119.4 82 70.7
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.2e-24 119.0 152 43.4
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.1e-22 112.5 77 70.1
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.8e-18 97.4 78 59.0
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.1e-17 95.9 56 73.2
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.1e-17 95.9 56 73.2
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.4e-17 93.6 78 57.7
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 7.1e-17 93.2 51 78.4
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 1.6e-16 92.0 79 57.0
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.3e-15 88.2 79 53.2
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 2.3e-15 88.2 65 63.1
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.3e-14 84.3 73 56.2
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.3e-14 84.3 73 56.2
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.1e-12 79.3 253 27.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 3.1e-12 77.8 37 91.9
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 5.4e-09 67.0 32 75.0
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 3.5e-08 64.3 293 23.9
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 3.9e-07 60.8 219 24.7
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 8.7e-07 59.7 286 21.3


User provided reference genes

Program Settings