Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g066130.4 Solanum lycopersicum HOM05D006365 ORTHO05D007893 2.3e-162 575.5 286 100.0
Sopen09g027890 Solanum pennellii HOM05D006365 ORTHO05D007893 5.9e-134 481.1 250 94.8
PGSC0003DMG400019907 Solanum tuberosum HOM05D006365 ORTHO05D007893 7.5e-129 464.2 250 91.6
Nitab4.5_0004328g0020 Nicotiana tabacum HOM05D006365 ORTHO05D007893 9.2e-103 377.5 253 74.7
Nitab4.5_0000187g0360 Nicotiana tabacum HOM05D006365 ORTHO05D007893 3.2e-95 352.4 276 68.5
Peaxi162Scf00719g00049 Petunia axillaris HOM05D006365 ORTHO05D007893 7.6e-89 331.3 259 67.6
CAN.G1501.1 Capsicum annuum HOM05D006365 ORTHO05D007893 1.5e-84 317.0 180 85.6
Migut.D00394 Erythranthe guttata HOM05D006365 ORTHO05D007893 1.1e-82 310.8 259 63.3
MSTRG.18301 Avicennia marina HOM05D006365 ORTHO05D007893 2.7e-78 296.2 260 58.5
Dinv22456 Davidia involucrata HOM05D006365 ORTHO05D007893 1.7e-77 293.5 247 59.1
Ciclev10019917m.g Citrus clementina HOM05D006365 ORTHO05D007893 1.6e-75 287.0 242 59.5
EL10Ac5g10447 Beta vulgaris HOM05D006365 ORTHO05D007893 2.1e-75 286.6 237 61.2
Lj2A1156T49 Lonicera japonica HOM05D006365 ORTHO05D007893 2.1e-75 286.6 208 65.4
SGA_v2.0_scaffold1G00596 Striga asiatica HOM05D006365 ORTHO05D007893 8.1e-75 284.6 261 57.5
TWI12G0027 Tripterygium wilfordii HOM05D006365 ORTHO05D007893 8.1e-75 284.6 232 60.8
GSVIVG01000761001 Vitis vinifera HOM05D006365 ORTHO05D007893 8.1e-75 284.6 218 63.3
CSS0000446 Camellia sinensis var. sinensis HOM05D006365 ORTHO05D007893 1.1e-74 284.3 265 55.1
CSS0009937 Camellia sinensis var. sinensis HOM05D006365 ORTHO05D007893 1.1e-74 284.3 265 55.1
TAR362G0809 Trochodendron aralioides HOM05D006365 ORTHO05D007893 1.1e-74 284.3 240 59.6
Gorai.004G074000 Gossypium raimondii HOM05D006365 ORTHO05D007893 1.4e-74 283.9 206 66.0
TAR633G0237 Trochodendron aralioides HOM05D006365 ORTHO05D007893 2.4e-74 283.1 246 58.1
unitig_22.g5284 Utricularia gibba HOM05D006365 ORTHO05D007893 3.1e-74 282.7 261 57.5
RcHm_v2.0_Chr6g0289161 Rosa chinensis HOM05D006365 ORTHO05D007893 4.0e-74 282.3 234 59.0
Actinidia33762 Actinidia chinensis HOM05D006365 ORTHO05D007893 5.3e-74 282.0 232 59.9
vmacro02635 Vaccinium macrocarpon HOM05D006365 ORTHO05D007893 6.9e-74 281.6 231 61.5
Gohir.A08G061000 Gossypium hirsutum HOM05D006365 ORTHO05D007893 1.2e-73 280.8 249 57.4
Cc01_g18670 Coffea canephora HOM05D006365 ORTHO05D007893 1.5e-73 280.4 277 54.9
Thecc.01G264700 Theobroma cacao HOM05D006365 ORTHO05D007893 7.6e-73 278.1 202 65.3
Rhsim13G0031800 Rhododendron simsii HOM05D006365 ORTHO05D007893 1.3e-72 277.3 248 58.1
MD10G1190800 Malus domestica HOM05D006365 ORTHO05D007893 2.2e-72 276.6 257 56.0
Gohir.A11G128200 Gossypium hirsutum HOM05D006365 ORTHO05D007893 2.9e-72 276.2 249 59.0
Potri.005G220400 Populus trichocarpa HOM05D006365 ORTHO05D007893 3.8e-72 275.8 256 54.3
FAN20G2720 Fragaria x ananassa HOM05D006365 ORTHO05D007893 4.9e-72 275.4 229 59.0
Gohir.D08G070250 Gossypium hirsutum HOM05D006365 ORTHO05D007893 4.9e-72 275.4 206 64.6
Prupe.8G229800 Prunus persica HOM05D006365 ORTHO05D007893 4.9e-72 275.4 239 59.4
COL.COLO4_08271 Corchorus olitorius HOM05D006365 ORTHO05D007893 6.4e-72 275.0 202 65.3
TWI75G1360 Tripterygium wilfordii HOM05D006365 ORTHO05D007893 6.4e-72 275.0 231 59.7
Gohir.D11G134100 Gossypium hirsutum HOM05D006365 ORTHO05D007893 1.1e-71 274.2 252 58.3
SalBow4G1819 Salvia bowleyana HOM05D006365 ORTHO05D007893 1.4e-71 273.9 366 44.8
Hund09578 Selenicereus undatus HOM05D006365 ORTHO05D007893 1.4e-71 273.9 224 60.3
Sabra05G0169100 Salix brachista HOM05D006365 ORTHO05D007893 1.9e-71 273.5 254 54.3
FAN15G1626 Fragaria x ananassa HOM05D006365 ORTHO05D007893 2.4e-71 273.1 229 59.0
Gorai.007G143300 Gossypium raimondii HOM05D006365 ORTHO05D007893 2.4e-71 273.1 252 58.7
Manes.01G200300 Manihot esculenta HOM05D006365 ORTHO05D007893 2.4e-71 273.1 246 56.1
Sed0004051 Sechium edule HOM05D006365 ORTHO05D007893 3.2e-71 272.7 253 56.1
Potri.002G042700 Populus trichocarpa HOM05D006365 ORTHO05D007893 4.2e-71 272.3 225 58.2
FAN27G2025 Fragaria x ananassa HOM05D006365 ORTHO05D007893 7.1e-71 271.6 229 58.5
DCAR_018456 Daucus carota HOM05D006365 ORTHO05D007893 1.6e-70 270.4 223 58.7
AUR62032234 Chenopodium quinoa HOM05D006365 ORTHO05D007893 2.1e-70 270.0 228 60.5
FvH4_2g22240 Fragaria vesca HOM05D006365 ORTHO05D007893 2.1e-70 270.0 237 59.5
FAN24G0578 Fragaria x ananassa HOM05D006365 ORTHO05D007893 2.1e-70 270.0 237 59.5
MD05G1203500 Malus domestica HOM05D006365 ORTHO05D007893 3.5e-70 269.2 238 57.1
PSO210G3674 Papaver somniferum HOM05D006365 ORTHO05D007893 3.5e-70 269.2 245 60.8
Lsat_1_v5_gn_9_9520 Lactuca sativa HOM05D006365 ORTHO05D007893 4.6e-70 268.9 238 56.7
MBI11_g20313_MAGBIO Magnolia biondii HOM05D006365 ORTHO05D007893 4.6e-70 268.9 222 60.8
PSO832G0319 Papaver somniferum HOM05D006365 ORTHO05D007893 6.0e-70 268.5 215 64.7
AUR62011919 Chenopodium quinoa HOM05D006365 ORTHO05D007893 1.0e-69 267.7 228 60.1
MELO3C015749.2 Cucumis melo HOM05D006365 ORTHO05D007893 1.0e-69 267.7 259 53.7
Duzib211G0170 Durio zibethinus HOM05D006365 ORTHO05D007893 1.3e-69 267.3 221 60.6
Atru.chr5.1605 Acer truncatum HOM05D006365 ORTHO05D007893 3.9e-69 265.8 240 57.9
Cfa002346 Carpinus fangiana HOM05D006365 ORTHO05D007893 3.9e-69 265.8 244 57.0
ClCG09G007650 Citrullus lanatus HOM05D006365 ORTHO05D007893 8.7e-69 264.6 216 59.7
Lj5g0002733 Lotus japonicus HOM05D006365 ORTHO05D007893 1.1e-68 264.2 209 63.2
arahy.Tifrunner.gnm1.ann1.8IP52C Arachis hypogaea HOM05D006365 ORTHO05D007893 1.9e-68 263.5 230 55.7
VMungo0720G1621 Vigna mungo HOM05D006365 ORTHO05D007893 3.3e-68 262.7 238 57.6
PGR044G0103 Punica granatum HOM05D006365 ORTHO05D007893 4.3e-68 262.3 174 71.3
Lalb_Chr02g0142351 Lupinus albus HOM05D006365 ORTHO05D007893 5.6e-68 261.9 209 59.8
Haze_24555 Corylus avellana HOM05D006365 ORTHO05D007893 7.4e-68 261.5 248 55.2
Phvul.007G178600 Phaseolus vulgaris HOM05D006365 ORTHO05D007893 7.4e-68 261.5 226 59.3
arahy.Tifrunner.gnm1.ann1.47C7BL Arachis hypogaea HOM05D006365 ORTHO05D007893 1.3e-67 260.8 260 53.8
Sc17g0000830 Simmondsia chinensis HOM05D006365 ORTHO05D007893 1.3e-67 260.8 170 70.6
Dinv34587 Davidia involucrata HOM05D006365 ORTHO05D007893 2.8e-67 259.6 219 58.4
Eucgr.K03306 Eucalyptus grandis HOM05D006365 ORTHO05D007893 3.7e-67 259.2 182 70.9
C05p04910 Brassica napus HOM05D006365 ORTHO05D007893 4.8e-67 258.8 235 55.3
CANSAT01G1790 Cannabis sativa HOM05D006365 ORTHO05D007893 6.2e-67 258.5 197 64.0
CsaV3_7G027480 Cucumis sativus L. HOM05D006365 ORTHO05D007893 8.1e-67 258.1 259 52.9
BolC5t29263H Brassica oleracea HOM05D006365 ORTHO05D007893 1.1e-66 257.7 250 52.8
TPR.G9050 Trifolium pratense HOM05D006365 ORTHO05D007893 1.1e-66 257.7 180 66.7
Glyma.13G120200 Glycine max HOM05D006365 ORTHO05D007893 1.4e-66 257.3 200 64.0
AL1G16740 Arabidopsis lyrata HOM05D006365 ORTHO05D007893 5.3e-66 255.4 247 55.5
Medtr1g070375 Medicago truncatula HOM05D006365 ORTHO05D007893 5.3e-66 255.4 227 55.1
CARHR006420 Cardamine hirsuta HOM05D006365 ORTHO05D007893 1.2e-65 254.2 269 52.0
Thhalv10007491m.g Eutrema salsugineum HOM05D006365 ORTHO05D007893 1.2e-65 254.2 178 67.4
Glyma.10G034000 Glycine max HOM05D006365 ORTHO05D007893 1.5e-65 253.8 215 60.5
Aa31LG1G7780 Aethionema arabicum HOM05D006365 ORTHO05D007893 2.6e-65 253.1 257 54.9
Carub.0001s0606 Capsella rubella HOM05D006365 ORTHO05D007893 3.4e-65 252.7 248 54.8
HanXRQChr10g0281321 Helianthus annuus HOM05D006365 ORTHO05D007893 2.9e-64 249.6 178 64.6
Aqoxy5G00306 Aquilegia oxysepala HOM05D006365 ORTHO05D007893 4.9e-64 248.8 194 61.9
BcaB02g06753 Brassica carinata HOM05D006365 ORTHO05D007893 4.9e-64 248.8 273 50.2
QL04p081293 Quercus lobata HOM05D006365 ORTHO05D007893 4.9e-64 248.8 206 60.7
A10p05310 Brassica napus HOM05D006365 ORTHO05D007893 6.5e-64 248.4 193 60.1
BraA10t42796Z Brassica rapa HOM05D006365 ORTHO05D007893 6.5e-64 248.4 193 60.1
AT1G06730 Arabidopsis thaliana HOM05D006365 ORTHO05D007893 8.4e-64 248.1 178 65.2
Sp1g05460 Schrenkiella parvula HOM05D006365 ORTHO05D007893 1.1e-63 247.7 272 51.5
Os03g0164700 Oryza sativa ssp. japonica HOM05D006365 ORTHO05D007893 1.4e-63 247.3 168 67.3
ATR0665G646 Amborella trichopoda HOM05D006365 ORTHO05D007893 1.9e-63 246.9 169 68.0
Nn1g02631 Nelumbo nucifera HOM05D006365 ORTHO05D007893 1.9e-63 246.9 275 49.1
CDE02G1033 Ceratophyllum demersum HOM05D006365 ORTHO05D007893 3.2e-63 246.1 239 52.3
Psat6g056320 Pisum sativum HOM05D006365 ORTHO05D007893 1.6e-62 243.8 257 46.3
THA.LOC104800808 Tarenaya hassleriana HOM05D006365 ORTHO05D007893 3.5e-62 242.7 288 47.6
HPP92_006135 Vanilla planifolia HOM05D006365 ORTHO05D007893 3.5e-62 242.7 181 65.7
SHI09906 Sapria himalayana HOM05D006365 ORTHO05D007893 2.3e-61 240.0 221 51.1
THA.LOC104826252 Tarenaya hassleriana HOM05D006365 ORTHO05D007893 2.3e-61 240.0 276 47.5
Hma1.2p1_1029F.1_g249750 Hydrangea macrophylla HOM05D006365 ORTHO05D007893 1.3e-59 234.2 197 58.9
Ca_09701_v3 Cicer arietinum L. HOM05D006365 ORTHO05D007893 2.1e-59 233.4 207 54.1
SEGI_04676 Sequoiadendron giganteum HOM05D006365 ORTHO05D007893 5.5e-55 218.8 170 58.2
CiPaw.03G259200 Carya illinoinensis HOM05D006365 ORTHO05D007893 1.6e-54 217.2 151 66.2
DCAR_007340 Daucus carota HOM05D006365 ORTHO05D007893 3.0e-53 213.0 165 62.4
Lj1A60T61 Lonicera japonica HOM05D006365 ORTHO05D007893 1.3e-51 207.6 167 60.5
BcaC05g24646 Brassica carinata HOM05D006365 ORTHO05D007893 4.2e-47 192.6 129 66.7
Cpa.g.sc52.148 Carica papaya HOM05D006365 ORTHO05D007893 2.7e-46 189.9 144 59.0
CBR_g3113 Chara braunii HOM05D006365 ORTHO05D007893 2.8e-43 179.9 168 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2414 Anthoceros agrestis HOM05D006365 ORTHO05D007893 3.1e-42 176.4 168 49.4
SMO117G0162 Selaginella moellendorffii HOM05D006365 ORTHO05D007893 8.5e-40 168.3 173 48.0
MBI11_g09868_MAGBIO Magnolia biondii HOM05D006365 ORTHO05D007893 1.1e-36 157.9 144 56.9
Cre09.g387050 Chlamydomonas reinhardtii HOM05D006365 ORTHO05D007893 2.0e-36 157.1 209 41.6
MCO01G134 Micromonas commoda HOM05D006365 ORTHO05D007893 8.0e-30 135.2 193 37.3
TWI23G0019 Tripterygium wilfordii HOM05D006365 ORTHO05D007893 5.3e-26 122.5 114 53.5
PRCOL_00006866 Prasinoderma coloniale HOM05D006365 ORTHO05D007893 8.3e-19 98.6 204 34.8
Nn3g19548 Nelumbo nucifera HOM05D006365 ORTHO05D007893 1.5e-12 77.8 80 51.2
Sc26g0002160 Simmondsia chinensis HOM05D006365 ORTHO05D007893 1.7e-08 64.3 104 40.4
Zm00001eb004990 Zea mays HOM05D006365 ORTHO05D007893 2.9e-08 63.5 61 50.8


User provided reference genes

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