Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 1.9e-181 639.0 314 100.0
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 4.8e-177 624.4 311 98.7
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 2.0e-175 619.0 311 98.1
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 2.1e-169 599.0 312 93.9
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 9.9e-167 590.1 311 92.0
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 8.7e-163 577.0 302 91.4
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.0e-142 510.4 297 79.8
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.3e-142 510.0 302 78.5
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 3.8e-142 508.4 311 77.5
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.4e-141 506.5 297 78.5
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.5e-141 505.8 311 77.2
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.2e-141 505.0 302 78.1
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.7e-140 502.3 300 77.7
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 6.1e-140 501.1 297 78.1
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 5.1e-139 498.0 302 75.8
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.1e-138 496.9 310 72.9
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.1e-138 496.9 302 75.8
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.5e-138 496.5 297 77.8
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 2.0e-138 496.1 311 74.9
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 4.3e-138 495.0 310 75.2
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 5.7e-138 494.6 307 75.2
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.7e-137 493.0 300 74.3
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 8.2e-137 490.7 302 74.5
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 8.2e-137 490.7 300 75.7
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.1e-136 490.3 302 74.5
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.8e-136 489.6 307 75.2
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 2.4e-136 489.2 300 76.0
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.2e-135 486.9 310 73.2
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.2e-135 486.9 298 75.2
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.5e-135 486.5 302 73.8
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.6e-135 485.7 306 75.8
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.6e-135 485.7 302 74.5
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 3.4e-135 485.3 309 73.5
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 7.7e-135 484.2 299 74.6
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.0e-134 483.8 302 74.2
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.0e-134 483.8 302 73.8
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.7e-134 483.0 302 73.5
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 2.2e-134 482.6 311 73.6
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.2e-134 482.6 302 74.2
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.2e-134 482.6 302 73.5
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 2.9e-134 482.3 302 72.5
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 3.8e-134 481.9 302 74.2
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 3.8e-134 481.9 302 73.5
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 5.0e-134 481.5 313 72.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 6.5e-134 481.1 305 73.1
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 8.5e-134 480.7 300 75.0
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 8.5e-134 480.7 302 73.5
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.1e-133 480.3 299 73.6
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.4e-133 479.9 303 73.9
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.4e-133 479.9 307 73.3
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.5e-133 479.2 303 71.9
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 7.2e-133 477.6 302 72.8
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.2e-132 476.9 303 72.6
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.2e-132 476.9 297 74.4
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.6e-132 476.5 300 73.3
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 1.6e-132 476.5 300 74.3
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 2.1e-132 476.1 299 72.9
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 3.6e-132 475.3 299 72.9
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 4.7e-132 474.9 302 72.8
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 4.7e-132 474.9 301 71.1
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.0e-131 473.8 302 71.5
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.0e-131 473.8 307 70.7
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.0e-131 473.8 302 73.8
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.3e-131 472.6 381 62.7
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 8.8e-131 470.7 307 71.3
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.5e-130 469.9 304 72.4
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 1.5e-130 469.9 302 71.9
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.0e-130 469.5 301 72.1
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 5.7e-130 468.0 382 62.6
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.7e-129 466.5 302 71.9
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 2.2e-129 466.1 300 73.0
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.2e-129 466.1 310 69.4
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.3e-129 464.5 302 70.9
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 3.1e-128 462.2 310 68.7
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 9.1e-128 460.7 313 67.1
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 1.2e-127 460.3 311 67.2
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.6e-127 459.1 309 68.6
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.5e-127 458.4 302 70.5
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 7.7e-127 457.6 310 68.1
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 1.3e-126 456.8 317 67.5
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 2.2e-126 456.1 310 67.7
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 3.8e-126 455.3 313 66.1
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 3.8e-126 455.3 310 67.4
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-125 453.8 310 67.4
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.1e-125 453.8 308 67.2
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 2.5e-125 452.6 308 67.2
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 3.2e-125 452.2 310 66.8
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 5.5e-125 451.4 298 68.8
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 1.2e-124 450.3 300 70.0
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 8.0e-124 447.6 326 65.6
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 8.0e-124 447.6 307 67.4
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.0e-123 447.2 308 66.2
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.8e-123 446.4 308 66.6
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 2.6e-122 442.6 300 70.7
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.6e-122 442.6 301 69.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 7.5e-122 441.0 301 68.8
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.4e-120 436.8 338 62.7
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.7e-118 429.9 315 63.8
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 4.2e-117 425.2 311 65.6
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 2.1e-116 422.9 297 64.6
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.4e-115 420.2 302 65.9
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 7.5e-114 414.5 297 64.3
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 2.2e-110 402.9 275 68.4
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 5.0e-110 401.7 262 70.6
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.5e-109 399.4 311 63.0
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 4.7e-108 395.2 263 68.4
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 2.6e-106 389.4 254 68.9
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 5.6e-101 371.7 237 72.6
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 5.2e-99 365.2 177 98.9
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 2.9e-97 359.4 303 54.8
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.9e-97 359.4 297 57.9
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 7.0e-96 354.8 177 95.5
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 1.3e-94 350.5 272 65.4
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 2.0e-90 336.7 291 55.3
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 7.5e-90 334.7 216 69.0
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-88 330.9 201 76.1
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 3.2e-88 329.3 297 54.9
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 2.0e-87 326.6 297 52.2
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 1.0e-78 297.7 211 63.5
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 5.4e-72 275.4 178 75.3
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 3.6e-68 262.7 237 51.5
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 3.2e-64 249.6 181 66.9
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 3.1e-59 233.0 142 72.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.3e-53 212.6 194 53.1
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 3.8e-49 199.5 110 88.2
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.1e-48 198.0 130 68.5
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 2.4e-48 196.8 171 53.2
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.9e-45 187.2 107 84.1
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 7.4e-45 185.3 133 64.7
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 4.8e-44 182.6 131 66.4
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 4.9e-41 172.6 123 65.0
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.7e-39 166.8 145 56.6
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.6e-31 139.4 105 60.0
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.9e-31 138.7 105 61.0
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 5.1e-30 136.0 102 60.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.1e-22 109.4 74 64.9
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.8e-17 93.2 52 75.0


User provided reference genes

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