Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.2e-183 646.4 313 100.0
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 3.7e-182 641.3 313 99.4
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 2.4e-165 585.5 313 90.4
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.1e-154 550.1 296 89.2
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.1e-153 545.8 295 89.2
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.8e-131 473.0 236 96.2
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.9e-123 445.3 319 69.9
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 3.3e-122 442.2 297 70.7
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 5.7e-122 441.4 293 71.7
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 8.2e-121 437.6 233 91.0
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.4e-120 436.0 310 69.7
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 2.6e-119 432.6 314 66.6
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.0e-118 430.6 310 68.4
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.0e-118 430.6 310 67.1
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.2e-118 429.5 311 68.5
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 3.8e-118 428.7 309 68.9
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 6.5e-118 427.9 322 66.1
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.1e-117 427.2 296 68.9
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 3.2e-117 425.6 294 68.4
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 4.2e-117 425.2 291 68.4
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 7.2e-117 424.5 248 79.4
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 9.4e-117 424.1 310 65.8
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 4.7e-116 421.8 272 71.7
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 8.0e-116 421.0 313 66.1
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.8e-115 419.9 295 68.1
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.8e-115 419.9 309 67.6
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.3e-115 419.5 253 76.7
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 6.7e-115 417.9 314 64.0
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 8.8e-115 417.5 309 65.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.1e-114 417.2 302 68.9
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.1e-114 417.2 308 64.0
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 2.0e-114 416.4 246 76.4
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 2.0e-114 416.4 246 76.0
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 2.6e-114 416.0 252 76.6
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 3.3e-114 415.6 253 75.5
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.3e-114 415.6 289 68.2
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 3.3e-114 415.6 309 64.7
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 4.4e-114 415.2 259 73.0
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.7e-113 413.3 309 65.7
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.2e-113 412.9 309 64.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 2.8e-113 412.5 253 75.5
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 3.7e-113 412.1 294 67.0
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 8.2e-113 411.0 257 72.4
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 2.4e-112 409.5 315 67.9
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 3.1e-112 409.1 242 76.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 5.3e-112 408.3 240 77.5
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 9.1e-112 407.5 259 72.2
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.2e-111 407.1 248 74.2
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.0e-111 406.4 254 74.0
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 2.0e-111 406.4 254 73.6
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.0e-111 406.4 311 64.0
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 4.5e-111 405.2 310 64.5
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 7.7e-111 404.4 312 64.4
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.7e-110 403.3 246 74.4
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.7e-110 403.3 245 74.3
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.7e-110 403.3 245 74.3
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 3.8e-110 402.1 230 80.4
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 3.8e-110 402.1 230 80.4
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.1e-109 400.6 256 73.0
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.5e-109 399.4 316 63.9
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 2.1e-108 396.4 314 63.1
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 3.6e-108 395.6 230 78.7
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 4.7e-108 395.2 246 72.8
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 8.0e-108 394.4 311 62.7
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.4e-107 393.7 310 63.5
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 2.6e-106 389.4 295 61.7
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 5.7e-106 388.3 250 72.0
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.3e-105 387.1 249 70.3
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.7e-105 386.7 256 68.4
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 3.7e-105 385.6 255 69.4
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.4e-104 382.9 273 65.2
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.1e-104 382.1 252 71.4
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.1e-104 382.1 252 71.4
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 4.1e-104 382.1 304 63.2
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 1.9e-101 373.2 262 66.4
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 9.4e-101 370.9 296 61.8
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.7e-100 368.6 257 66.1
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.0e-99 367.5 276 63.8
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.4e-99 367.1 289 63.3
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 4.0e-99 365.5 259 66.8
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 6.8e-99 364.8 230 71.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 2.0e-98 363.2 311 61.4
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 3.1e-96 355.9 241 68.0
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 1.6e-95 353.6 315 57.5
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.9e-94 349.4 290 60.0
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.9e-94 349.4 247 65.2
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 3.8e-94 349.0 208 76.0
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 8.6e-94 347.8 248 65.3
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.1e-93 347.4 248 65.7
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.4e-88 330.5 312 56.7
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.7e-86 323.6 248 64.1
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 7.5e-82 308.1 249 59.4
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 8.6e-78 294.7 261 59.0
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 8.6e-78 294.7 192 72.9
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.9e-77 293.5 248 59.3
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 7.3e-77 291.6 215 64.2
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.6e-74 283.1 244 56.6
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 4.4e-74 282.3 243 55.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.2e-68 264.2 151 78.1
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.6e-68 262.7 295 47.1
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.4e-67 260.8 168 68.5
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 2.4e-64 250.0 177 67.8
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 2.2e-57 226.9 197 54.8
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.1e-51 208.0 288 40.3
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.5e-45 187.6 244 41.8
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 1.5e-45 187.6 170 63.5
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.3e-44 184.5 208 47.1
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 1.4e-40 171.0 154 55.2
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.2e-39 167.9 128 61.7
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.0e-33 148.3 99 70.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 2.2e-33 147.1 135 51.1
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 6.0e-31 139.0 98 67.3
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.9e-29 134.0 90 65.6
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.6e-28 131.0 92 65.2
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 7.6e-26 122.1 119 53.8
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.0e-25 121.7 119 54.6
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.0e-25 121.7 150 41.3
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 4.9e-25 119.4 178 39.3
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 3.9e-22 109.8 63 77.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 4.8e-20 102.8 143 41.3
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-19 101.3 136 40.4
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.7e-18 95.5 57 78.9
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 2.1e-15 87.4 202 31.2
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-11 75.1 116 37.1
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 9.1e-11 72.0 59 49.2
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 4.5e-10 69.7 94 42.6
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.7e-09 67.8 121 32.2
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-08 65.1 117 34.2
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.2e-08 63.5 41 68.3
ECA246G0314 Erigeron canadensis HOM05D001287 ORTHO05D001226 4.2e-08 63.2 223 26.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 5.5e-08 62.8 159 30.2
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-07 61.6 53 52.8
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 1.2e-07 61.6 50 62.0
RcHm_v2.0_Chr2g0173421 Rosa chinensis HOM05D001287 ORTHO05D001226 3.6e-07 60.1 218 27.1
Gohir.A07G227400 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.4e-06 58.2 225 24.9
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 3.9e-06 56.6 69 49.3
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 3.9e-06 56.6 49 55.1
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 3.9e-06 56.6 50 58.0
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 3.9e-06 56.6 175 25.7
CANSAT64G2102 Cannabis sativa HOM05D001287 ORTHO05D001226 5.1e-06 56.2 233 24.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 6.7e-06 55.8 52 51.9
Dinv15968 Davidia involucrata HOM05D065274 ORTHO05D179967 8.8e-06 55.5 55 49.1
Dinv18228 Davidia involucrata HOM05D065274 ORTHO05D180883 8.8e-06 55.5 55 49.1
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 8.8e-06 55.5 50 56.0


User provided reference genes

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