Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.5e-189 664.5 340 100.0
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.8e-185 652.5 340 98.2
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.5e-173 611.3 340 91.5
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 2.0e-133 479.6 338 76.3
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 9.2e-126 454.1 337 71.5
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.8e-122 442.6 337 70.3
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 1.8e-121 439.9 338 69.8
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.1e-97 359.4 337 60.2
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 7.9e-93 344.7 344 57.0
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.3e-92 343.2 342 56.7
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.1e-89 334.3 342 55.0
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 4.9e-87 325.5 337 56.1
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 4.6e-85 318.9 336 54.2
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.0e-84 317.8 348 53.2
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 5.1e-84 315.5 341 56.3
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 3.3e-83 312.8 339 55.2
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 2.0e-80 303.5 355 53.0
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.6e-77 293.9 343 53.9
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.6e-77 293.9 347 51.3
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 1.6e-74 283.9 341 50.1
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 1.0e-71 274.6 266 60.9
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 8.5e-71 271.6 325 48.6
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 5.5e-70 268.9 326 48.8
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 2.3e-68 263.5 337 47.2
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 5.1e-68 262.3 429 42.2
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 2.0e-67 260.4 323 49.8
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.3e-67 259.2 331 47.7
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.7e-66 257.3 341 46.9
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 1.7e-66 257.3 338 48.2
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 4.8e-66 255.8 224 59.8
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 8.2e-66 255.0 345 46.7
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.2e-64 251.1 349 45.8
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 1.2e-64 251.1 357 45.7
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.0e-64 250.4 345 46.4
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 4.5e-64 249.2 310 50.3
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 1.3e-63 247.7 293 50.2
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 3.8e-63 246.1 271 52.4
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.5e-62 243.4 331 46.2
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 4.2e-62 242.7 345 45.5
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 9.4e-62 241.5 333 46.5
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.1e-61 240.4 335 46.3
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.7e-61 240.0 347 45.0
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.7e-61 239.2 333 46.2
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 6.1e-61 238.8 269 51.7
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 1.1e-59 234.6 306 48.4
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.5e-59 234.2 308 48.4
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 2.6e-59 233.4 304 49.3
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 2.2e-58 230.3 272 50.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 8.2e-58 228.4 315 47.3
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 2.6e-56 223.4 331 44.1
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 3.5e-56 223.0 311 46.6
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 4.5e-56 222.6 300 46.7
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 4.5e-56 222.6 244 50.8
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 3.8e-55 219.5 313 45.0
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.1e-54 218.0 337 46.0
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.1e-54 218.0 317 45.1
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.9e-54 217.2 313 44.7
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.5e-54 216.9 274 46.7
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.0e-52 211.5 250 48.4
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.5e-51 207.6 344 43.0
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.5e-51 207.6 363 42.4
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 2.0e-51 207.2 306 44.8
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.6e-51 206.8 324 44.4
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 9.7e-51 204.9 350 44.0
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.7e-50 204.1 228 52.6
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 1.1e-49 201.4 317 41.6
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.4e-49 201.1 306 44.4
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.8e-49 200.7 338 41.1
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 2.0e-48 197.2 307 41.7
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 5.9e-48 195.7 354 41.2
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.7e-47 194.1 303 42.9
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.9e-47 193.4 344 43.0
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 3.8e-47 193.0 350 40.9
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 5.0e-47 192.6 340 41.8
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.5e-46 191.0 322 40.4
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 1.5e-46 191.0 340 42.1
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 4.2e-46 189.5 357 41.7
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 5.5e-46 189.1 302 42.4
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.1e-45 187.2 310 41.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.0e-44 184.9 306 41.2
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.4e-44 184.5 332 41.0
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 2.3e-44 183.7 306 41.2
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 2.3e-44 183.7 340 41.8
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 3.4e-43 179.9 351 39.0
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 4.4e-43 179.5 341 40.8
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 9.8e-43 178.3 312 42.0
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.3e-42 177.9 309 40.5
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 2.8e-42 176.8 309 41.4
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 3.7e-42 176.4 316 38.3
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 1.1e-41 174.9 336 39.9
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.1e-41 174.9 331 38.1
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.4e-41 174.5 273 42.9
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.8e-41 174.1 308 39.3
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 1.8e-41 174.1 341 39.6
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 1.8e-41 174.1 311 42.1
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.4e-41 173.7 334 36.8
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 4.1e-41 172.9 277 44.0
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.6e-40 171.0 279 41.9
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 2.0e-40 170.6 347 37.8
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 4.5e-40 169.5 328 36.9
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 4.5e-40 169.5 299 39.5
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.5e-40 169.5 270 44.4
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.0e-39 168.3 283 41.3
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.0e-39 168.3 286 40.9
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 1.0e-39 168.3 284 41.2
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 2.2e-39 167.2 288 40.6
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 2.2e-39 167.2 337 39.2
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 2.9e-39 166.8 289 40.5
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 2.9e-39 166.8 347 38.6
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 6.5e-39 165.6 337 39.2
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 8.5e-39 165.2 291 41.2
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 8.5e-39 165.2 239 43.1
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.1e-38 164.9 337 39.2
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 1.1e-38 164.9 284 40.8
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 3.2e-38 163.3 233 44.2
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 5.5e-38 162.5 331 37.2
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.2e-37 161.4 337 36.8
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.6e-37 161.0 269 39.8
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 3.6e-37 159.8 336 38.4
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.1e-37 159.1 311 38.9
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.0e-36 158.3 314 38.9
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 1.4e-36 157.9 301 36.2
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.4e-36 157.9 361 38.8
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.8e-36 157.5 342 38.3
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.3e-36 157.1 361 38.5
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.0e-36 156.4 357 38.4
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 6.8e-36 155.6 301 35.9
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 6.8e-36 155.6 273 38.8
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 1.2e-35 154.8 290 41.4
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 6.3e-34 149.1 213 45.1
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 1.4e-33 147.9 339 37.2
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.1e-33 146.7 305 37.0
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.4e-33 146.0 222 41.0
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.2e-32 144.8 209 41.6
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.2e-32 144.8 295 38.6
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.0e-32 144.1 331 36.6
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 5.6e-30 136.0 186 44.1
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 4.0e-28 129.8 330 33.6
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.0e-28 129.8 347 34.3
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 2.6e-27 127.1 258 38.0
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 3.4e-27 126.7 145 53.8
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 2.2e-26 124.0 315 35.9
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.7e-24 117.1 267 34.1
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 7.8e-24 115.5 314 34.4
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.1e-22 111.7 326 31.3
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 4.3e-22 109.8 234 38.0
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 9.8e-19 98.6 135 48.1
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.3e-18 98.2 259 31.7
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.2e-18 97.4 240 34.2
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 2.9e-18 97.1 129 47.3
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 6.4e-18 95.9 176 37.5
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 9.2e-17 92.0 171 38.0
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 2.0e-16 90.9 207 37.7
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 5.6e-14 82.8 156 37.2
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.2e-11 75.1 68 52.9
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.0e-11 74.3 99 47.5
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.3e-10 71.6 93 41.9
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 1.3e-10 71.6 93 41.9
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 4.1e-09 66.6 90 43.3
Cpa.g.sc113.51 Carica papaya HOM05D001047 ORTHO05D000768 1.1e-06 58.5 68 51.5
A05p31930 Brassica napus HOM05D002346 ORTHO05D002452 4.3e-06 56.6 182 28.0
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 4.3e-06 56.6 148 31.8
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 5.6e-06 56.2 149 32.9
ATR0753G139 Amborella trichopoda HOM05D002346 ORTHO05D002452 5.6e-06 56.2 141 32.6
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 7.3e-06 55.8 49 53.1
Gohir.A12G270200 Gossypium hirsutum HOM05D002346 ORTHO05D002452 9.5e-06 55.5 161 34.2
Gorai.008G291000 Gossypium raimondii HOM05D002346 ORTHO05D002452 9.5e-06 55.5 161 34.2
Lj6g0004228 Lotus japonicus HOM05D001047 ORTHO05D000768 9.5e-06 55.5 142 30.3
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 9.5e-06 55.5 196 26.5
Pp3c5_11730 Physcomitrium patens HOM05D002346 ORTHO05D002452 9.5e-06 55.5 162 32.1


User provided reference genes

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