Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065510.3 Solanum lycopersicum HOM05D007386 ORTHO05D009210 1.4e-45 186.8 175 100.0
Sopen09g027270 Solanum pennellii HOM05D007386 ORTHO05D009210 1.6e-44 183.3 175 96.6
PGSC0003DMG400019353 Solanum tuberosum HOM05D007386 ORTHO05D009210 5.7e-39 164.9 174 96.0
Nitab4.5_0009452g0010 Nicotiana tabacum HOM05D007386 ORTHO05D009210 2.6e-31 139.4 185 63.2
Nitab4.5_0000252g0090 Nicotiana tabacum HOM05D007386 ORTHO05D009210 6.4e-30 134.8 182 63.2
CSS0002766 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 9.5e-26 120.9 175 49.7
CSS0036584 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.2e-25 120.6 181 49.2
Oeu059791.1 Olea europaea HOM05D007386 ORTHO05D009210 1.2e-25 120.6 179 42.5
Peaxi162Scf00230g01010 Petunia axillaris HOM05D007386 ORTHO05D009210 1.2e-25 120.6 178 64.0
CAN.G1105.2 Capsicum annuum HOM05D007386 ORTHO05D009210 2.8e-25 119.4 175 84.0
DCAR_018437 Daucus carota HOM05D007386 ORTHO05D009210 1.1e-24 117.5 178 44.4
Actinidia00789 Actinidia chinensis HOM05D007386 ORTHO05D009210 2.6e-23 112.8 183 42.1
HanXRQChr10g0282251 Helianthus annuus HOM05D007386 ORTHO05D009210 6.4e-22 108.2 175 42.3
ECA247G1531 Erigeron canadensis HOM05D007386 ORTHO05D009210 1.1e-21 107.5 177 44.1
Sc05g0001200 Simmondsia chinensis HOM05D007386 ORTHO05D009210 1.4e-21 107.1 175 37.7
PGR044G1958 Punica granatum HOM05D007386 ORTHO05D009210 4.1e-21 105.5 178 40.4
SalBow4G1029 Salvia bowleyana HOM05D007386 ORTHO05D009210 5.4e-21 105.1 177 40.1
Rhsim13G0027600 Rhododendron simsii HOM05D007386 ORTHO05D009210 9.2e-21 104.4 185 41.1
MSTRG.21545 Avicennia marina HOM05D007386 ORTHO05D009210 3.5e-20 102.4 180 37.2
Medtr1g071630 Medicago truncatula HOM05D007386 ORTHO05D009210 4.6e-20 102.1 176 42.0
ClCG09G007290 Citrullus lanatus HOM05D007386 ORTHO05D009210 1.3e-19 100.5 180 45.6
Lsat_1_v5_gn_9_6101 Lactuca sativa HOM05D007386 ORTHO05D009210 1.7e-19 100.1 178 49.4
Duzib168G0678 Durio zibethinus HOM05D007386 ORTHO05D009210 2.3e-19 99.8 176 39.2
Manes.05G078600 Manihot esculenta HOM05D007386 ORTHO05D009210 1.1e-18 97.4 179 35.8
vmacro02599 Vaccinium macrocarpon HOM05D007386 ORTHO05D009210 1.9e-18 96.7 185 40.5
CANSAT78G1636 Cannabis sativa HOM05D007386 ORTHO05D009210 3.3e-18 95.9 185 41.6
Gohir.D08G093000 Gossypium hirsutum HOM05D007386 ORTHO05D009210 3.3e-18 95.9 177 41.2
QL12p020752 Quercus lobata HOM05D007386 ORTHO05D009210 4.3e-18 95.5 177 40.7
EL10Ac3g07280 Beta vulgaris HOM05D007386 ORTHO05D009210 5.6e-18 95.1 173 41.0
MELO3C015793.2 Cucumis melo HOM05D007386 ORTHO05D009210 5.6e-18 95.1 188 48.4
TPR.G25681 Trifolium pratense HOM05D007386 ORTHO05D009210 7.3e-18 94.7 179 38.5
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 9.5e-18 94.4 185 38.4
Glyma.02G145500 Glycine max HOM05D007386 ORTHO05D009210 1.2e-17 94.0 176 38.6
Nn6g34127 Nelumbo nucifera HOM05D007386 ORTHO05D009210 1.2e-17 94.0 182 37.9
Ah.04g150680 Amaranthus hybridus HOM05D007386 ORTHO05D009210 1.6e-17 93.6 173 38.7
AUR62018389 Chenopodium quinoa HOM05D000027 ORTHO05D000066 1.6e-17 93.6 136 41.9
unitig_0.g1138 Utricularia gibba HOM05D007386 ORTHO05D009210 1.6e-17 93.6 151 53.0
Gorai.004G098600 Gossypium raimondii HOM05D007386 ORTHO05D009210 2.8e-17 92.8 177 40.7
MD11G1280800 Malus domestica HOM05D007386 ORTHO05D009210 2.8e-17 92.8 184 53.3
TWI18G1441 Tripterygium wilfordii HOM05D007386 ORTHO05D009210 3.6e-17 92.4 175 37.1
VMungo0720G1463 Vigna mungo HOM05D007386 ORTHO05D009210 3.6e-17 92.4 177 36.7
AUR62030273 Chenopodium quinoa HOM05D007386 ORTHO05D009210 4.7e-17 92.0 173 41.0
MD03G1260500 Malus domestica HOM05D007386 ORTHO05D009210 6.2e-17 91.7 184 45.1
Eucgr.K03341 Eucalyptus grandis HOM05D007386 ORTHO05D009210 1.1e-16 90.9 176 39.8
Phvul.007G173800 Phaseolus vulgaris HOM05D007386 ORTHO05D009210 1.4e-16 90.5 177 36.7
Migut.D00331 Erythranthe guttata HOM05D007386 ORTHO05D009210 1.8e-16 90.1 122 60.7
Sed0008482 Sechium edule HOM05D007386 ORTHO05D009210 2.3e-16 89.7 181 53.6
arahy.Tifrunner.gnm1.ann1.ZF8TUR Arachis hypogaea HOM05D007386 ORTHO05D009210 3.1e-16 89.4 176 39.8
Hund09518 Selenicereus undatus HOM05D007386 ORTHO05D009210 3.1e-16 89.4 175 49.1
Cfa006177 Carpinus fangiana HOM05D007386 ORTHO05D009210 4.0e-16 89.0 183 37.7
COL.COLO4_25451 Corchorus olitorius HOM05D007386 ORTHO05D009210 4.0e-16 89.0 175 40.0
RcHm_v2.0_Chr6g0290391 Rosa chinensis HOM05D007386 ORTHO05D009210 4.0e-16 89.0 188 53.2
Thecc.09G179900 Theobroma cacao HOM05D007386 ORTHO05D009210 4.0e-16 89.0 176 42.6
Ca_09739_v3 Cicer arietinum L. HOM05D007386 ORTHO05D009210 6.8e-16 88.2 176 35.8
SGA_v2.0_scaffold1G00514 Striga asiatica HOM05D007386 ORTHO05D009210 6.8e-16 88.2 138 53.6
GSVIVG01001191001 Vitis vinifera HOM05D007386 ORTHO05D009210 6.8e-16 88.2 171 38.6
CsaV3_7G027780 Cucumis sativus L. HOM05D007386 ORTHO05D009210 8.9e-16 87.8 193 53.9
Lalb_Chr06g0162851 Lupinus albus HOM05D007386 ORTHO05D009210 8.9e-16 87.8 177 36.2
arahy.Tifrunner.gnm1.ann1.JNW8E7 Arachis hypogaea HOM05D007386 ORTHO05D009210 4.4e-15 85.5 176 39.2
CDE06G2441 Ceratophyllum demersum HOM05D007386 ORTHO05D009210 5.8e-15 85.1 142 38.0
FvH4_2g23140 Fragaria vesca HOM05D007386 ORTHO05D009210 9.9e-15 84.3 190 48.4
Glyma.10G028600 Glycine max HOM05D007386 ORTHO05D009210 9.9e-15 84.3 177 35.0
Prupe.8G236700 Prunus persica HOM05D007386 ORTHO05D009210 2.2e-14 83.2 186 37.6
FAN20G3170 Fragaria x ananassa HOM05D007386 ORTHO05D009210 2.9e-14 82.8 187 49.2
FAN24G1308 Fragaria x ananassa HOM05D007386 ORTHO05D009210 2.9e-14 82.8 186 45.2
FAN15G1284 Fragaria x ananassa HOM05D007386 ORTHO05D009210 4.9e-14 82.0 185 40.0
Gohir.A08G081100 Gossypium hirsutum HOM05D007386 ORTHO05D009210 4.9e-14 82.0 127 40.9
Sabra05G0162700 Salix brachista HOM05D007386 ORTHO05D009210 8.4e-14 81.3 176 34.7
CiPaw.07G088700 Carya illinoinensis HOM05D007386 ORTHO05D009210 1.1e-13 80.9 182 34.1
Cc01_g19160 Coffea canephora HOM05D007386 ORTHO05D009210 1.4e-13 80.5 131 37.4
Ciclev10022575m.g Citrus clementina HOM05D007386 ORTHO05D009210 1.9e-13 80.1 139 51.1
Aqoxy5G00426 Aquilegia oxysepala HOM05D007386 ORTHO05D009210 2.4e-13 79.7 183 47.5
Potri.005G213000 Populus trichocarpa HOM05D007386 ORTHO05D009210 2.4e-13 79.7 176 34.7
Cpa.g.sc95.34 Carica papaya HOM05D007386 ORTHO05D009210 3.2e-13 79.3 176 33.5
Atru.chr5.1489 Acer truncatum HOM05D007386 ORTHO05D009210 5.4e-13 78.6 175 48.6
Lj5g0008996 Lotus japonicus HOM05D007386 ORTHO05D009210 5.4e-13 78.6 177 39.5
MBI11_g22999_MAGBIO Magnolia biondii HOM05D007386 ORTHO05D009210 7.1e-13 78.2 125 40.0
Os06g0630300 Oryza sativa ssp. japonica HOM05D007386 ORTHO05D009210 1.2e-12 77.4 185 57.3
Psat6g059880 Pisum sativum HOM05D007386 ORTHO05D009210 4.6e-12 75.5 122 39.3
ATR0665G488 Amborella trichopoda HOM05D007386 ORTHO05D009210 6.0e-12 75.1 120 38.3
HPP92_020354 Vanilla planifolia HOM05D007386 ORTHO05D009210 6.0e-12 75.1 161 34.8
Haze_04670 Corylus avellana HOM05D007386 ORTHO05D009210 1.0e-11 74.3 126 37.3
PSO210G0643 Papaver somniferum HOM05D007386 ORTHO05D009210 1.1e-10 70.9 145 48.3
FAN27G1502 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.2e-09 67.4 122 63.9
Pp3c25_4880 Physcomitrium patens HOM05D007386 ORTHO05D009210 1.2e-09 67.4 144 39.6
PSO832G2845 Papaver somniferum HOM05D007386 ORTHO05D009210 4.7e-09 65.5 141 46.1
Dinv34778 Davidia involucrata HOM05D002659 ORTHO05D002940 1.1e-08 64.3 115 35.7
SMO351G0424 Selaginella moellendorffii HOM05D007386 ORTHO05D009210 5.2e-08 62.0 30 96.7
arahy.Tifrunner.gnm1.ann1.90IGTQ Arachis hypogaea HOM05D007386 ORTHO05D009210 6.8e-08 61.6 87 41.4
arahy.Tifrunner.gnm1.ann1.92TB4L Arachis hypogaea HOM05D007386 ORTHO05D009210 1.2e-07 60.8 84 42.9
Aa31LG9G9760 Aethionema arabicum HOM05D000698 ORTHO05D009210 1.5e-07 60.5 134 33.6
THA.LOC104813154 Tarenaya hassleriana HOM05D007386 ORTHO05D009210 2.0e-07 60.1 133 32.3
BcaC04g21312 Brassica carinata HOM05D007386 ORTHO05D009210 2.6e-07 59.7 142 31.7
C09p33290 Brassica napus HOM05D007386 ORTHO05D009210 2.6e-07 59.7 142 31.7
BolC9t56165H Brassica oleracea HOM05D007386 ORTHO05D009210 2.6e-07 59.7 142 31.7
CARHR252930 Cardamine hirsuta HOM05D007386 ORTHO05D009210 2.6e-07 59.7 128 32.0
AL6G48080 Arabidopsis lyrata HOM05D007386 ORTHO05D009210 3.4e-07 59.3 32 87.5
BcaB01g01820 Brassica carinata HOM05D007386 ORTHO05D009210 3.4e-07 59.3 128 32.0
A09p26200 Brassica napus HOM05D007386 ORTHO05D009210 3.4e-07 59.3 32 87.5
BraA09t38188Z Brassica rapa HOM05D007386 ORTHO05D009210 3.4e-07 59.3 32 87.5
Carub.0006s3245 Capsella rubella HOM05D007386 ORTHO05D009210 3.4e-07 59.3 32 87.5
Thhalv10029017m.g Eutrema salsugineum HOM05D007386 ORTHO05D009210 3.4e-07 59.3 32 87.5
Sp6g04310 Schrenkiella parvula HOM05D007386 ORTHO05D009210 3.4e-07 59.3 32 87.5
AT4G04614 Arabidopsis thaliana HOM05D007386 ORTHO05D009210 9.9e-07 57.8 139 33.8
SGA_v2.0_scaffold244G44361 Striga asiatica HOM05D007386 ORTHO05D009210 2.2e-06 56.6 32 84.4
SGA_v2.0_scaffold90G27801 Striga asiatica HOM05D000069 ORTHO05D399115 6.4e-06 55.1 39 64.1


User provided reference genes

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