Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.8e-117 424.9 217 100.0
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 3.6e-115 418.3 217 99.1
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.7e-107 392.1 217 94.0
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.1e-71 273.9 214 68.7
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 1.3e-64 250.4 216 65.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.6e-59 233.4 220 58.2
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 4.7e-59 231.9 220 58.6
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.1e-58 230.7 224 59.8
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.1e-58 230.7 214 62.6
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 7.6e-57 224.6 220 57.3
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 7.6e-57 224.6 216 58.3
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.7e-56 223.4 213 58.2
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 6.4e-56 221.5 216 56.9
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 8.4e-56 221.1 217 58.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.1e-55 220.7 187 66.3
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.4e-55 220.3 218 60.6
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 4.6e-54 215.3 224 58.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.0e-53 214.2 220 57.3
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 3.0e-53 212.6 220 55.5
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 5.1e-53 211.8 217 58.1
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 5.6e-52 208.4 221 58.4
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.3e-51 207.2 218 58.7
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 4.8e-51 205.3 217 55.3
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.1e-51 204.5 218 58.3
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.8e-50 203.4 219 54.8
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 3.1e-50 202.6 218 53.7
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 4.0e-50 202.2 217 56.7
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 6.9e-50 201.4 218 54.6
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 3.4e-49 199.1 216 54.6
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.3e-48 197.2 224 55.4
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 1.7e-48 196.8 218 56.0
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.4e-48 194.5 221 53.4
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.1e-47 194.1 222 54.5
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.1e-47 194.1 218 53.7
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 3.2e-47 192.6 219 52.1
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 3.2e-47 192.6 218 52.8
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.2e-46 190.7 218 54.1
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 1.2e-46 190.7 219 54.8
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.2e-46 190.7 230 53.5
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 2.1e-46 189.9 217 54.4
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 7.9e-46 188.0 216 53.2
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.0e-45 187.6 214 55.1
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.3e-45 187.2 220 54.5
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.3e-45 187.2 221 52.0
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.8e-45 186.8 217 54.8
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.7e-45 184.9 221 51.1
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 8.7e-45 184.5 237 50.2
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 8.7e-45 184.5 218 51.8
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.9e-44 183.3 222 51.8
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.5e-44 183.0 218 56.9
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 3.3e-44 182.6 225 51.1
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 4.3e-44 182.2 216 51.4
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 7.4e-44 181.4 219 52.1
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 7.4e-44 181.4 216 53.7
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 9.6e-44 181.0 164 61.6
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 9.6e-44 181.0 217 52.5
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.3e-43 180.6 222 51.4
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.6e-43 180.3 214 52.3
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.8e-43 179.5 228 51.8
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.6e-43 179.1 218 53.7
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 4.8e-43 178.7 221 52.5
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.8e-43 178.7 218 53.2
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.4e-42 177.2 214 51.4
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.4e-42 177.2 222 50.9
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.4e-42 176.4 222 50.0
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 6.9e-42 174.9 219 52.5
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 6.9e-42 174.9 232 50.4
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 6.9e-42 174.9 227 49.3
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 9.0e-42 174.5 215 51.2
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.2e-41 174.1 220 49.5
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 2.0e-41 173.3 226 50.0
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 3.4e-41 172.6 224 49.1
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.3e-40 170.6 221 49.8
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.7e-40 170.2 197 54.8
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.1e-39 167.5 216 50.9
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.1e-39 167.5 218 46.8
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.4e-39 167.2 216 50.9
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.4e-39 167.2 219 49.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.9e-39 166.8 217 50.2
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.2e-39 165.6 213 49.8
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 5.5e-39 165.2 223 49.3
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.5e-39 165.2 217 47.9
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.2e-38 164.1 222 50.5
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.2e-38 164.1 219 49.3
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 1.2e-38 164.1 208 48.6
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.7e-38 162.9 216 49.1
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 3.5e-38 162.5 217 48.8
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 6.0e-38 161.8 220 48.2
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 6.7e-37 158.3 216 47.7
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.1e-36 157.5 216 46.8
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.1e-36 157.5 217 49.3
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.1e-36 157.5 219 47.0
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.5e-36 157.1 216 46.8
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.9e-36 156.8 214 49.1
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.9e-36 156.8 218 46.8
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.9e-36 156.8 218 46.8
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.9e-36 156.8 224 47.8
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 2.5e-36 156.4 219 49.8
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.3e-36 155.6 223 47.5
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 7.4e-36 154.8 219 47.5
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 2.1e-35 153.3 227 48.5
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.8e-35 152.9 225 46.7
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 6.2e-35 151.8 224 48.2
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.1e-35 151.4 222 45.5
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.4e-34 150.6 245 46.5
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.8e-34 150.2 217 45.6
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.4e-34 149.8 216 46.3
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 3.1e-34 149.4 186 46.8
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 4.5e-33 145.6 224 47.8
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.3e-32 144.1 244 43.0
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.7e-32 143.7 219 44.7
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 2.9e-32 142.9 221 45.7
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 3.8e-32 142.5 216 44.9
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 4.9e-32 142.1 219 42.0
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.4e-31 140.6 208 48.1
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 4.2e-31 139.0 217 44.7
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 5.5e-31 138.7 212 43.9
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.6e-30 137.1 217 43.8
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.7e-30 136.3 219 43.4
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 2.7e-30 136.3 171 49.1
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.6e-30 135.6 217 42.4
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 7.9e-30 134.8 218 40.4
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.3e-29 134.0 218 42.7
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.0e-29 132.9 223 40.8
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 3.0e-29 132.9 207 44.9
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 8.7e-29 131.3 191 42.9
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-28 131.0 221 42.1
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 4.3e-28 129.0 223 42.6
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 5.7e-28 128.6 222 41.9
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 9.6e-28 127.9 218 42.7
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 4.8e-27 125.6 218 41.3
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 6.3e-27 125.2 218 41.3
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 6.9e-26 121.7 216 40.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 9.0e-26 121.3 216 41.7
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-25 120.9 217 41.5
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.2e-25 120.9 217 41.5
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 7.6e-25 118.2 222 41.4
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.0e-24 117.9 215 41.9
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 5.5e-23 112.1 88 70.5
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 9.3e-23 111.3 222 42.3
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 1.2e-22 110.9 279 36.2
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.2e-22 110.9 158 45.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.1e-22 110.2 218 39.4
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.3e-21 106.7 213 36.6
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 6.7e-21 105.1 213 38.0
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.1e-20 104.4 215 39.5
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.1e-20 104.4 221 38.5
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.3e-19 100.9 218 37.2
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 3.7e-19 99.4 221 38.9
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.1e-18 97.8 206 36.9
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.3e-16 90.9 137 41.6
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 5.0e-16 89.0 85 63.5
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.9e-15 87.0 168 39.9
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 3.2e-15 86.3 220 37.7
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 2.0e-12 77.0 218 34.4
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 3.3e-12 76.3 86 54.7
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 2.2e-11 73.6 63 57.1
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 2.8e-11 73.2 208 34.6
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 3.7e-11 72.8 80 57.5
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 6.9e-10 68.6 197 32.0
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 2.0e-09 67.0 81 49.4
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.7e-08 63.9 199 33.7
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 6.5e-08 62.0 39 69.2
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 2.5e-07 60.1 100 44.0
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 4.2e-07 59.3 87 46.0
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 7.2e-07 58.5 113 38.9
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.6e-06 57.4 80 48.8


User provided reference genes

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