Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065320.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 1.2e-103 379.8 187 100.0
Sopen09g027060 Solanum pennellii HOM05D006072 ORTHO05D007363 2.7e-63 245.7 127 94.5
PGSC0003DMG400019330 Solanum tuberosum HOM05D006072 ORTHO05D007363 4.7e-63 245.0 127 95.3
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 3.2e-56 222.2 128 82.0
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 2.6e-53 212.6 124 83.1
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 5.7e-53 211.5 124 82.3
Peaxi162Scf00641g00039 Petunia axillaris HOM05D006072 ORTHO05D007363 1.3e-49 200.3 127 73.2
Oeu025733.1 Olea europaea HOM05D006072 ORTHO05D007363 2.9e-41 172.6 124 65.3
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 7.5e-37 157.9 124 63.7
SalBow4G0595 Salvia bowleyana HOM05D006072 ORTHO05D007363 1.8e-35 153.3 131 58.0
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 6.6e-33 144.8 127 58.3
Nitab4.5_0000876g0020 Nicotiana tabacum HOM05D006072 ORTHO05D007363 7.3e-32 141.4 132 52.3
Sopen10g022790 Solanum pennellii HOM05D006072 ORTHO05D007363 1.6e-31 140.2 132 52.3
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 2.8e-31 139.4 132 51.5
Peaxi162Scf00003g00145 Petunia axillaris HOM05D006072 ORTHO05D007363 3.6e-31 139.0 135 52.6
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 4.7e-31 138.7 124 55.6
CSS0004323 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.4e-30 137.1 121 57.9
Migut.D00310 Erythranthe guttata HOM05D006072 ORTHO05D007363 1.4e-30 137.1 112 65.2
Peaxi162Scf00003g00149 Petunia axillaris HOM05D006072 ORTHO05D007363 1.4e-30 137.1 139 51.1
Cc02_g18000 Coffea canephora HOM05D006072 ORTHO05D007363 2.3e-30 136.3 125 53.6
Dinv12556 Davidia involucrata HOM05D006072 ORTHO05D007363 4.0e-30 135.6 126 54.0
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 5.2e-30 135.2 124 54.8
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 5.2e-30 135.2 132 50.8
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 6.8e-30 134.8 132 51.5
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 8.9e-30 134.4 132 52.3
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 1.5e-29 133.7 128 51.6
Dinv07032 Davidia involucrata HOM05D006072 ORTHO05D007363 2.0e-29 133.3 124 54.0
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 2.6e-29 132.9 127 53.5
Oeu007228.1 Olea europaea HOM05D006072 ORTHO05D007363 3.4e-29 132.5 130 51.5
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 5.8e-29 131.7 128 52.3
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 7.5e-29 131.3 130 51.5
CSS0011017 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 9.8e-29 131.0 121 54.5
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 2.2e-28 129.8 132 51.5
SGA_v2.0_scaffold55G19813 Striga asiatica HOM05D006072 ORTHO05D007363 1.1e-27 127.5 132 49.2
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 1.4e-27 127.1 135 49.6
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 1.4e-27 127.1 117 56.4
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 1.4e-27 127.1 125 52.8
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 1.9e-27 126.7 127 52.0
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 3.2e-27 125.9 126 50.0
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 4.1e-27 125.6 128 50.0
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 4.1e-27 125.6 129 50.4
Nn3g18504 Nelumbo nucifera HOM05D006072 ORTHO05D007363 4.1e-27 125.6 132 49.2
SalBow3G0772 Salvia bowleyana HOM05D006072 ORTHO05D007363 5.4e-27 125.2 127 48.8
SGA_v2.0_scaffold138G35329 Striga asiatica HOM05D000358 ORTHO05D007363 5.4e-27 125.2 108 59.3
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 9.2e-27 124.4 137 48.9
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 1.2e-26 124.0 132 48.5
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 1.6e-26 123.6 132 49.2
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 1.6e-26 123.6 128 51.6
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 2.7e-26 122.9 140 49.3
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 4.6e-26 122.1 138 47.1
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 4.6e-26 122.1 139 46.0
MBI19_g02922_MAGBIO Magnolia biondii HOM05D006072 ORTHO05D007363 6.0e-26 121.7 128 49.2
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 6.0e-26 121.7 137 48.9
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 7.8e-26 121.3 132 49.2
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 1.0e-25 120.9 136 48.5
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.3e-25 120.6 124 50.0
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 1.3e-25 120.6 137 46.7
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 1.7e-25 120.2 138 46.4
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 2.3e-25 119.8 140 47.1
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 3.0e-25 119.4 128 49.2
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 3.0e-25 119.4 136 46.3
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 5.0e-25 118.6 135 46.7
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 5.0e-25 118.6 135 46.7
PGR083G2817 Punica granatum HOM05D006072 ORTHO05D007363 5.0e-25 118.6 179 39.1
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 6.6e-25 118.2 135 45.9
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 8.6e-25 117.9 132 44.7
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 8.6e-25 117.9 135 45.2
Lalb_Chr12g0203671 Lupinus albus HOM05D006072 ORTHO05D007363 1.5e-24 117.1 136 45.6
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 3.3e-24 115.9 124 48.4
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 3.3e-24 115.9 130 44.6
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 3.3e-24 115.9 139 46.0
AUR62003481 Chenopodium quinoa HOM05D006072 ORTHO05D007363 4.3e-24 115.5 124 47.6
AUR62015493 Chenopodium quinoa HOM05D006072 ORTHO05D007363 5.6e-24 115.2 120 50.8
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 9.5e-24 114.4 126 47.6
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 2.8e-23 112.8 132 42.4
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 3.6e-23 112.5 120 49.2
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 3.6e-23 112.5 133 44.4
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 3.6e-23 112.5 132 43.9
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 1.4e-22 110.5 143 44.8
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 1.8e-22 110.2 132 43.9
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 2.3e-22 109.8 133 43.6
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 3.1e-22 109.4 132 43.9
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 3.1e-22 109.4 126 47.6
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 4.0e-22 109.0 114 48.2
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 4.0e-22 109.0 132 43.2
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 4.0e-22 109.0 133 43.6
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 6.8e-22 108.2 133 42.9
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 6.4e-20 101.7 84 60.7
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 8.3e-20 101.3 140 41.4
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.9e-19 100.1 145 39.3
PGR083G1472 Punica granatum HOM05D006072 ORTHO05D007363 7.8e-18 94.7 130 42.3
Rhsim09G0083000 Rhododendron simsii HOM05D006072 ORTHO05D007363 1.7e-17 93.6 76 61.8
Os02g0491300 Oryza sativa ssp. japonica HOM05D006072 ORTHO05D007363 8.6e-17 91.3 155 34.2
arahy.Tifrunner.gnm1.ann1.78KFMW Arachis hypogaea HOM05D006072 ORTHO05D007363 1.5e-16 90.5 119 42.9
arahy.Tifrunner.gnm1.ann1.G5ZNF6 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.5e-16 90.5 119 42.9
arahy.Tifrunner.gnm1.ann1.U641A1 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.5e-16 90.5 119 42.9
arahy.Tifrunner.gnm1.ann1.W4NXZ5 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.5e-16 90.5 119 42.9
ATR0598G294 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.9e-16 90.1 201 29.9
AUR62017790 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.5e-16 89.7 99 47.5
Actinidia07224 Actinidia chinensis HOM05D006072 ORTHO05D007363 9.5e-16 87.8 100 51.0
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 3.6e-15 85.9 81 51.9
Dinv20308 Davidia involucrata HOM05D006072 ORTHO05D007363 1.8e-14 83.6 97 52.6
Actinidia12426 Actinidia chinensis HOM05D006072 ORTHO05D007363 3.1e-14 82.8 90 46.7
ATR0598G193 Amborella trichopoda HOM05D006072 ORTHO05D007363 2.0e-13 80.1 86 50.0
ATR0598G249 Amborella trichopoda HOM05D006072 ORTHO05D007363 3.4e-13 79.3 105 44.8
Medtr0082s0140 Medicago truncatula HOM05D006072 ORTHO05D007363 7.6e-13 78.2 92 43.5
Ca_20317_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 1.1e-11 74.3 84 44.0
PGSC0003DMG400023402 Solanum tuberosum HOM05D000923 ORTHO05D000720 3.2e-11 72.8 49 71.4
CAN.G1465.3 Capsicum annuum HOM05D000923 ORTHO05D000720 7.8e-10 68.2 48 68.8
Solyc09g008720.3 Solanum lycopersicum HOM05D000191 ORTHO05D000122 1.7e-09 67.0 46 67.4
Sopen05g033530 Solanum pennellii HOM05D000923 ORTHO05D000720 2.3e-09 66.6 49 67.3
Solyc05g055070.4 Solanum lycopersicum HOM05D000923 ORTHO05D000720 3.0e-09 66.2 49 67.3
Phvul.011G140200 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 5.6e-08 62.0 74 48.6
Rhsim05G0175700 Rhododendron simsii HOM05D000923 ORTHO05D000720 2.1e-07 60.1 66 48.5
Actinidia06780 Actinidia chinensis HOM05D000923 ORTHO05D000720 3.6e-07 59.3 66 50.0
Nitab4.5_0000687g0110 Nicotiana tabacum HOM05D000923 ORTHO05D000720 3.6e-07 59.3 49 59.2
Nitab4.5_0006096g0020 Nicotiana tabacum HOM05D000923 ORTHO05D000720 4.7e-07 58.9 49 59.2
Peaxi162Scf00519g00115 Petunia axillaris HOM05D000923 ORTHO05D000720 4.7e-07 58.9 49 55.1
unitig_0.g119 Utricularia gibba HOM05D006072 ORTHO05D007363 1.4e-06 57.4 38 63.2
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 1.8e-06 57.0 134 32.8
Lj2C39T5 Lonicera japonica HOM05D000923 ORTHO05D000720 2.4e-06 56.6 48 54.2
Oeu033247.1 Olea europaea HOM05D000923 ORTHO05D000720 2.4e-06 56.6 66 47.0
Dinv07189 Davidia involucrata HOM05D006072 ORTHO05D007363 3.1e-06 56.2 59 49.2
vmacro20005 Vaccinium macrocarpon HOM05D000923 ORTHO05D000720 4.0e-06 55.8 66 47.0
Hma1.2p1_0281F.1_g113250 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 6.8e-06 55.1 54 44.4
Nn1g04790 Nelumbo nucifera HOM05D000923 ORTHO05D000720 6.8e-06 55.1 83 37.3
MD00G1114300 Malus domestica HOM05D000923 ORTHO05D000720 8.9e-06 54.7 50 56.0


User provided reference genes

Program Settings