Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 1.4e-103 379.8 210 100.0
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 3.3e-89 332.0 210 84.3
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 1.9e-73 279.6 151 94.7
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 3.5e-67 258.8 212 70.3
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 2.5e-65 252.7 212 68.9
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 1.6e-56 223.4 210 62.4
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 6.9e-47 191.4 210 51.9
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 2.6e-46 189.5 197 56.9
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 9.3e-44 181.0 194 52.1
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 5.1e-42 175.3 157 58.6
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 8.7e-42 174.5 142 64.1
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 1.9e-41 173.3 210 51.0
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 2.5e-41 172.9 144 62.5
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 3.3e-41 172.6 202 49.5
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 1.6e-40 170.2 147 58.5
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 1.6e-40 170.2 198 52.0
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 2.1e-40 169.9 200 50.5
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 2.1e-40 169.9 202 50.5
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 3.7e-40 169.1 199 48.7
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 6.2e-40 168.3 204 50.0
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 8.1e-40 167.9 201 48.3
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 8.1e-40 167.9 201 51.2
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 1.4e-39 167.2 151 55.6
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 3.1e-39 166.0 200 50.5
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 4.0e-39 165.6 158 55.1
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 4.0e-39 165.6 158 55.1
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 5.3e-39 165.2 213 49.3
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 5.3e-39 165.2 168 55.4
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 6.9e-39 164.9 158 56.3
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 5.8e-38 161.8 123 67.5
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 5.8e-38 161.8 128 63.3
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 7.6e-38 161.4 149 58.4
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 2.2e-37 159.8 202 47.0
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 2.2e-37 159.8 213 46.9
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 2.9e-37 159.5 175 49.1
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 2.9e-37 159.5 124 62.9
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 2.9e-37 159.5 143 60.1
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 2.9e-37 159.5 188 46.8
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 3.8e-37 159.1 160 51.9
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 6.5e-37 158.3 163 52.1
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 6.5e-37 158.3 147 54.4
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 8.4e-37 157.9 205 47.8
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 8.4e-37 157.9 160 55.6
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 1.1e-36 157.5 157 54.8
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 1.1e-36 157.5 138 58.7
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 4.2e-36 155.6 173 53.2
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 7.1e-36 154.8 160 55.0
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 7.1e-36 154.8 142 58.5
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 9.3e-36 154.5 104 71.2
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 1.2e-35 154.1 199 44.2
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 1.6e-35 153.7 183 49.2
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 2.1e-35 153.3 181 48.1
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 2.1e-35 153.3 160 54.4
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 2.7e-35 152.9 204 46.1
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 2.7e-35 152.9 162 51.2
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 3.5e-35 152.5 183 49.2
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 3.5e-35 152.5 162 54.9
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 1.3e-34 150.6 106 65.1
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 2.3e-34 149.8 207 46.4
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 2.3e-34 149.8 96 70.8
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 3.0e-34 149.4 202 42.6
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 3.9e-34 149.1 115 62.6
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 5.1e-34 148.7 136 56.6
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 5.1e-34 148.7 130 58.5
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 5.1e-34 148.7 94 72.3
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 8.7e-34 147.9 130 60.8
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 8.7e-34 147.9 123 60.2
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 8.7e-34 147.9 155 52.3
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 7.4e-33 144.8 88 73.9
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 7.4e-33 144.8 154 46.1
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 1.3e-32 144.1 159 50.9
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 1.6e-32 143.7 115 60.9
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 1.6e-32 143.7 115 61.7
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 1.6e-32 143.7 115 61.7
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 1.6e-32 143.7 127 56.7
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 1.6e-32 143.7 115 61.7
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 1.6e-32 143.7 115 61.7
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 1.6e-32 143.7 115 61.7
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 2.1e-32 143.3 111 62.2
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 2.1e-32 143.3 127 55.9
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 2.8e-32 142.9 111 62.2
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 3.1e-31 139.4 87 75.9
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 2.2e-29 133.3 184 42.9
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 5.0e-29 132.1 223 42.2
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 1.2e-27 127.5 117 57.3
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 1.6e-27 127.1 156 42.3
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 2.1e-27 126.7 102 59.8
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 2.1e-27 126.7 94 63.8
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 2.1e-27 126.7 145 52.4
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 1.3e-26 124.0 127 55.1
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 3.0e-26 122.9 197 37.6
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 6.7e-26 121.7 99 57.6
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 6.7e-26 121.7 134 49.3
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 1.1e-25 120.9 85 63.5
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 1.9e-25 120.2 121 49.6
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 5.3e-23 112.1 137 48.9
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 6.9e-23 111.7 90 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 2.5e-20 103.2 99 48.5
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 5.1e-18 95.5 79 60.8
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 1.5e-14 84.0 87 54.0
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 3.4e-14 82.8 60 61.7
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 7.7e-14 81.6 91 51.6
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 1.1e-12 77.8 109 49.5
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.2e-11 74.3 66 59.1
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 1.8e-10 70.5 75 54.7
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 4.8e-08 62.4 100 44.0
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 2.6e-06 56.6 47 59.6


User provided reference genes

Program Settings