Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 1.7e-140 502.7 249 100.0
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 1.8e-139 499.2 249 98.8
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 1.5e-128 463.0 249 90.4
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 3.7e-124 448.4 250 86.8
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.6e-122 443.0 250 86.4
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 4.7e-119 431.4 247 85.0
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 9.5e-104 380.6 249 74.3
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.4e-102 376.7 250 73.2
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.4e-102 376.7 250 73.6
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.8e-102 376.3 250 73.6
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 4.9e-100 368.2 253 73.1
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 1.8e-99 366.3 250 71.2
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 4.6e-98 361.7 250 70.0
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 4.6e-98 361.7 248 70.2
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 5.9e-98 361.3 250 70.4
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 2.3e-97 359.4 251 71.3
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.5e-96 355.9 250 69.2
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 3.3e-96 355.5 251 69.3
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 4.3e-96 355.1 255 68.6
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 1.2e-95 353.6 250 70.0
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 3.6e-95 352.1 249 69.9
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.2e-94 348.2 251 67.7
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 5.2e-94 348.2 250 69.2
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 1.2e-93 347.1 250 66.4
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 1.2e-93 347.1 250 67.2
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 7.5e-93 344.4 250 67.2
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 1.7e-92 343.2 250 66.8
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 1.7e-92 343.2 315 59.0
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 1.7e-92 343.2 250 66.8
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 4.9e-92 341.7 250 66.0
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 8.3e-92 340.9 250 69.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 1.1e-91 340.5 250 66.0
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.9e-91 339.7 250 65.6
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 2.4e-91 339.3 248 64.9
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 1.6e-90 336.7 226 71.7
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 2.7e-90 335.9 246 66.7
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 2.7e-90 335.9 226 71.2
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 3.5e-90 335.5 250 64.8
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 1.0e-89 334.0 239 67.4
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.3e-89 333.6 250 66.0
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 1.3e-89 333.6 248 66.9
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 3.0e-89 332.4 251 66.1
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 3.0e-89 332.4 251 66.1
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 3.0e-89 332.4 250 65.6
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 3.0e-89 332.4 249 64.7
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 3.9e-89 332.0 252 63.1
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 5.0e-89 331.6 250 66.4
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 8.6e-89 330.9 252 63.5
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 8.6e-89 330.9 249 64.7
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 1.5e-88 330.1 245 65.3
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 4.3e-88 328.6 253 65.2
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 5.6e-88 328.2 258 62.4
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 2.8e-87 325.9 245 64.5
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 8.1e-87 324.3 228 69.3
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 1.1e-86 323.9 245 66.1
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.8e-86 323.2 251 64.5
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 2.3e-86 322.8 246 64.2
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 4.0e-86 322.0 260 63.5
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 4.0e-86 322.0 245 64.9
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 2.0e-85 319.7 245 64.1
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 2.9e-84 315.8 250 61.6
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 1.9e-83 313.2 251 61.8
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 3.2e-83 312.4 242 62.8
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 3.2e-83 312.4 250 61.6
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 5.4e-83 311.6 246 62.2
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 9.2e-83 310.8 250 61.2
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 1.6e-82 310.1 247 61.1
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 3.5e-82 308.9 251 60.2
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 6.0e-82 308.1 251 61.0
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 7.8e-82 307.8 277 55.6
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.7e-81 306.6 220 67.7
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 3.9e-81 305.4 250 60.0
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 1.1e-80 303.9 251 59.8
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 1.5e-80 303.5 250 59.2
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 4.3e-80 302.0 250 59.6
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 4.3e-80 302.0 255 58.8
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 5.6e-80 301.6 251 59.0
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 9.5e-80 300.8 301 52.2
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 4.7e-79 298.5 261 57.9
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 6.2e-79 298.1 251 59.0
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 6.2e-79 298.1 226 63.3
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 8.1e-79 297.7 257 58.4
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.8e-78 296.6 302 54.6
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.1e-78 295.8 250 59.6
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 8.9e-78 294.3 251 57.8
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 7.6e-77 291.2 233 60.9
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 3.2e-75 285.8 189 72.0
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 7.1e-75 284.6 212 62.7
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.7e-74 282.7 239 60.3
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 8.7e-73 277.7 217 65.0
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 1.1e-72 277.3 187 69.5
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 3.3e-72 275.8 249 57.4
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.4e-70 270.4 187 67.9
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 1.8e-70 270.0 246 55.7
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.4e-70 269.6 247 53.8
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.5e-69 266.9 245 54.3
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 2.2e-68 263.1 249 54.6
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 2.7e-66 256.1 214 59.3
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 1.2e-61 240.7 195 57.9
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.4e-59 233.8 207 58.9
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 2.6e-53 213.0 152 65.1
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 3.8e-52 209.1 165 63.0
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 6.5e-36 155.2 120 61.7
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 3.2e-35 152.9 217 39.2
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 6.5e-28 128.6 217 37.8
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.2e-26 124.4 135 50.4
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 1.3e-23 114.4 230 33.0
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.3e-23 114.4 203 38.4
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.3e-23 114.4 207 37.2
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 3.1e-22 109.8 205 33.2
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 5.5e-19 99.0 193 31.1
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 4.7e-18 95.9 130 45.4
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 9.7e-16 88.2 61 70.5
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 2.8e-15 86.7 162 31.5
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 3.1e-14 83.2 77 50.6
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 6.1e-10 68.9 67 53.7
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 2.2e-07 60.5 43 60.5
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 2.2e-07 60.5 43 60.5


User provided reference genes

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