Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 2.8e-69 265.4 156 100.0
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 4.3e-62 241.5 159 91.8
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.0e-43 179.5 159 71.1
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.6e-37 159.8 161 57.8
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 9.4e-25 117.5 139 49.6
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 4.7e-24 115.2 152 57.2
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 2.3e-23 112.8 119 51.3
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 3.0e-23 112.5 156 50.0
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 3.9e-23 112.1 149 54.4
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.1e-22 110.5 150 48.7
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.5e-22 110.2 140 50.7
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.0e-22 109.8 144 53.5
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 2.6e-22 109.4 134 57.5
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 4.4e-22 108.6 161 42.2
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 9.7e-22 107.5 162 43.8
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 2.8e-21 105.9 153 49.7
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.7e-21 105.5 140 56.4
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 4.8e-21 105.1 149 51.7
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 6.3e-21 104.8 128 53.9
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 6.3e-21 104.8 116 58.6
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 6.3e-21 104.8 113 53.1
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.8e-20 103.2 153 47.7
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 2.4e-20 102.8 153 52.9
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.1e-20 102.4 151 52.3
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.1e-20 102.1 116 65.5
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.1e-20 102.1 116 63.8
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 9.1e-20 100.9 147 50.3
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-19 100.5 175 43.4
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.2e-19 100.5 165 43.6
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.2e-19 100.5 138 52.2
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.2e-19 100.5 154 51.9
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.5e-19 100.1 144 36.8
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.0e-19 99.8 153 43.1
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.5e-19 99.0 156 43.6
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 5.9e-19 98.2 138 37.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 7.7e-19 97.8 130 51.5
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.0e-18 97.4 171 43.9
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.3e-18 97.1 110 56.4
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.3e-18 97.1 116 56.9
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 1.7e-18 96.7 141 56.7
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.7e-18 96.7 122 57.4
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.7e-18 96.7 48 81.2
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 2.2e-18 96.3 160 47.5
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 5.0e-18 95.1 115 49.6
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.1e-17 94.0 166 47.0
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.4e-17 93.6 150 36.0
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.4e-17 93.6 147 51.0
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 1.4e-17 93.6 156 47.4
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 4.2e-17 92.0 155 46.5
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.2e-17 92.0 159 52.8
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.2e-16 90.5 184 41.3
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.2e-16 90.5 114 50.0
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.2e-16 90.5 166 48.2
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 4.7e-16 88.6 141 41.8
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 6.1e-16 88.2 149 42.3
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 6.1e-16 88.2 149 42.3
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 8.0e-16 87.8 142 41.5
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 8.0e-16 87.8 48 66.7
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.0e-15 87.4 172 42.4
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.0e-15 87.4 181 44.8
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.4e-15 87.0 136 32.4
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.3e-15 86.3 146 47.3
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.3e-15 86.3 132 49.2
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.3e-15 86.3 140 37.9
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 2.3e-15 86.3 137 38.7
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 3.0e-15 85.9 140 40.0
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 3.9e-15 85.5 143 37.8
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.2e-15 85.1 168 40.5
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 5.2e-15 85.1 171 42.1
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 6.7e-15 84.7 49 61.2
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 8.8e-15 84.3 129 50.4
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 8.8e-15 84.3 128 44.5
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 8.8e-15 84.3 151 47.0
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.1e-14 84.0 48 64.6
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.1e-14 84.0 48 64.6
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.1e-14 84.0 111 55.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.1e-14 84.0 48 64.6
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.1e-14 84.0 146 48.6
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.1e-14 84.0 48 64.6
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.5e-14 83.6 140 38.6
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.0e-14 83.2 122 48.4
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.0e-14 83.2 48 64.6
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.0e-14 83.2 48 66.7
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.6e-14 82.8 48 64.6
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.6e-14 82.8 48 64.6
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.6e-14 82.8 48 64.6
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.6e-14 82.8 48 64.6
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.3e-14 82.4 107 44.9
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 4.4e-14 82.0 49 61.2
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 4.4e-14 82.0 48 62.5
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 4.4e-14 82.0 49 61.2
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 4.4e-14 82.0 48 62.5
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 4.4e-14 82.0 49 61.2
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 4.4e-14 82.0 48 62.5
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 4.4e-14 82.0 49 61.2
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 4.4e-14 82.0 48 62.5
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 4.4e-14 82.0 48 62.5
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 5.7e-14 81.6 110 54.5
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 5.7e-14 81.6 129 48.8
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.7e-14 81.6 113 40.7
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 9.7e-14 80.9 108 55.6
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.3e-13 80.5 108 56.5
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.3e-13 80.5 47 61.7
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.3e-13 80.5 178 40.4
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.3e-13 80.5 181 37.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.7e-13 80.1 157 37.6
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 2.2e-13 79.7 149 35.6
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 2.8e-13 79.3 49 61.2
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.8e-13 79.3 140 37.9
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.8e-13 79.3 143 43.4
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.8e-13 79.3 139 44.6
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 6.3e-13 78.2 165 40.0
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 8.2e-13 77.8 119 47.1
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-12 77.4 48 58.3
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.4e-12 77.0 138 46.4
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.4e-12 77.0 138 46.4
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.4e-12 77.0 138 46.4
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.8e-12 76.6 113 52.2
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.8e-12 76.6 112 50.9
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.8e-12 76.6 148 43.2
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.1e-12 75.9 148 46.6
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 3.1e-12 75.9 112 54.5
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.1e-12 75.9 159 32.7
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 5.3e-12 75.1 111 53.2
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.3e-12 75.1 61 49.2
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.2e-11 73.9 61 47.5
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.2e-11 73.9 61 47.5
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-11 73.6 61 47.5
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-11 73.6 61 47.5
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.6e-11 73.6 126 50.0
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 2.0e-11 73.2 48 58.3
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.0e-11 73.2 47 63.8
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.5e-11 72.4 48 56.2
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 7.7e-11 71.2 48 56.2
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.0e-10 70.9 48 56.2
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.0e-10 70.9 193 33.2
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.3e-10 70.5 142 45.8
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.7e-10 70.1 126 34.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.2e-10 69.7 48 52.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 2.2e-10 69.7 47 55.3
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.9e-10 69.3 49 49.0
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.9e-10 69.3 49 49.0
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 5.0e-10 68.6 47 53.2
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 6.5e-10 68.2 47 51.1
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.9e-09 66.6 47 53.2
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.9e-09 66.6 49 46.9
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.9e-09 66.6 49 46.9
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.5e-09 66.2 47 51.1
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 2.5e-09 66.2 158 29.7
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 2.5e-09 66.2 138 41.3
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.5e-09 66.2 47 51.1
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 5.5e-09 65.1 107 38.3
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.6e-08 63.5 42 54.8
Os09g0309600 Oryza sativa ssp. japonica HOM05D024720 ORTHO05D030308 5.2e-07 58.5 116 39.7
Zm00001eb097960 Zea mays HOM05D024720 ORTHO05D030308 7.5e-06 54.7 47 40.4


User provided reference genes

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